Variant report

Variant	rs16958494
Chromosome Location	chr15:74231349-74231350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74165797..74168180-chr15:74231250..74232878,2	MCF-7	breast:
2	chr15:74231331..74232913-chr15:74233031..74235989,2	K562	blood:
3	chr15:74212371..74214776-chr15:74230119..74231737,2	K562	blood:

Variant related genes	Relation type
ENSG00000167139	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12594324	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12594472	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440101	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550439	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2304721	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.93[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28603291	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41435250	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58490364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73446383	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74221800-74231800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:74222000-74231400	Weak transcription	Left Ventricle	heart
3	chr15:74222400-74233200	Weak transcription	Fetal Thymus	thymus
4	chr15:74222600-74243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:74224400-74231400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:74225200-74231400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:74227600-74233000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:74227600-74236600	Weak transcription	Thymus	Thymus
9	chr15:74227800-74233800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:74228200-74232800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:74228400-74231400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:74228400-74232800	Weak transcription	Gastric	stomach
13	chr15:74228400-74239600	Weak transcription	Pancreas	Pancrea
14	chr15:74228600-74231400	Weak transcription	Right Atrium	heart
15	chr15:74228600-74233200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:74228600-74233400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr15:74228800-74232800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:74228800-74243200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:74229000-74231400	Weak transcription	NHLF	lung
20	chr15:74229000-74232800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr15:74229000-74232800	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:74229000-74233400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:74229000-74236600	Weak transcription	Brain Substantia Nigra	brain
24	chr15:74229000-74243000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:74229200-74231400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:74229200-74231400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:74229200-74231400	Weak transcription	Brain Germinal Matrix	brain
28	chr15:74229200-74231600	Weak transcription	Brain Anterior Caudate	brain
29	chr15:74229200-74231800	Weak transcription	Fetal Heart	heart
30	chr15:74229200-74232800	Weak transcription	Adipose Nuclei	Adipose
31	chr15:74229200-74232800	Weak transcription	Fetal Muscle Leg	muscle
32	chr15:74229200-74232800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:74229200-74233000	Weak transcription	Fetal Intestine Small	intestine
34	chr15:74229200-74236400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:74229200-74236800	Weak transcription	Esophagus	oesophagus
36	chr15:74229200-74241000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr15:74229400-74231400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:74229400-74231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:74229400-74231600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr15:74229400-74232400	Weak transcription	Fetal Kidney	kidney
41	chr15:74229400-74233000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:74229400-74233000	Weak transcription	Stomach Mucosa	stomach
43	chr15:74229400-74233200	Weak transcription	NHEK	skin
44	chr15:74229600-74231400	Weak transcription	Aorta	Aorta
45	chr15:74229600-74231400	Weak transcription	Fetal Lung	lung
46	chr15:74229600-74232400	Weak transcription	Brain Hippocampus Middle	brain
47	chr15:74229600-74233000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr15:74229600-74233200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:74229600-74233200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:74229600-74233200	Weak transcription	HMEC	breast

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