Variant report

Variant	rs58490364
Chromosome Location	chr15:74230199-74230200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74218715..74223482-chr15:74226725..74230359,5	K562	blood:
2	chr15:74212371..74214776-chr15:74230119..74231737,2	K562	blood:
3	chr15:74227809..74230483-chr15:74244545..74246597,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129038	Chromatin interaction
ENSG00000261801	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12594324	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12594472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440101	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550439	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16958494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304721	0.98[ASN][1000 genomes]
rs28603291	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41435250	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73446383	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74221800-74231800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:74222000-74231400	Weak transcription	Left Ventricle	heart
3	chr15:74222400-74233200	Weak transcription	Fetal Thymus	thymus
4	chr15:74222600-74243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:74223400-74230400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:74224400-74231400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:74224800-74230200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:74225200-74231400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:74227600-74231200	Weak transcription	HSMMtube	muscle
10	chr15:74227600-74231200	Weak transcription	NHDF-Ad	bronchial
11	chr15:74227600-74233000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:74227600-74236600	Weak transcription	Thymus	Thymus
13	chr15:74227800-74233800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:74228200-74232800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:74228400-74231400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:74228400-74232800	Weak transcription	Gastric	stomach
17	chr15:74228400-74239600	Weak transcription	Pancreas	Pancrea
18	chr15:74228600-74231200	Weak transcription	HSMM	muscle
19	chr15:74228600-74231400	Weak transcription	Right Atrium	heart
20	chr15:74228600-74233200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:74228600-74233400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr15:74228800-74232800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:74228800-74243200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:74229000-74231400	Weak transcription	NHLF	lung
25	chr15:74229000-74232800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:74229000-74232800	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:74229000-74233400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:74229000-74236600	Weak transcription	Brain Substantia Nigra	brain
29	chr15:74229000-74243000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:74229200-74231000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:74229200-74231000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:74229200-74231000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:74229200-74231200	Weak transcription	NH-A	brain
34	chr15:74229200-74231400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:74229200-74231400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:74229200-74231400	Weak transcription	Brain Germinal Matrix	brain
37	chr15:74229200-74231600	Weak transcription	Brain Anterior Caudate	brain
38	chr15:74229200-74231800	Weak transcription	Fetal Heart	heart
39	chr15:74229200-74232800	Weak transcription	Adipose Nuclei	Adipose
40	chr15:74229200-74232800	Weak transcription	Fetal Muscle Leg	muscle
41	chr15:74229200-74232800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:74229200-74233000	Weak transcription	Fetal Intestine Small	intestine
43	chr15:74229200-74236400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:74229200-74236800	Weak transcription	Esophagus	oesophagus
45	chr15:74229200-74241000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr15:74229400-74231400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:74229400-74231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr15:74229400-74231600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr15:74229400-74232400	Weak transcription	Fetal Kidney	kidney
50	chr15:74229400-74233000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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