Variant report

Variant	rs894250
Chromosome Location	chr4:77129908-77129909
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:76860638..76862995-chr4:77129665..77131421,2	MCF-7	breast:
2	chr4:77117574..77120210-chr4:77127527..77130330,2	K562	blood:
3	chr4:77118894..77122374-chr4:77129647..77132337,3	K562	blood:
4	chr4:77129809..77132552-chr4:77141494..77144024,2	MCF-7	breast:
5	chr4:77125920..77131688-chr4:77131770..77137672,14	K562	blood:
6	chr4:77129658..77131326-chr4:77154481..77156766,2	MCF-7	breast:
7	chr4:77122932..77125835-chr4:77128901..77130952,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138760	Chromatin interaction
ENSG00000189157	Chromatin interaction
ENSG00000138744	Chromatin interaction

rs_ID	r²[population]
rs10032423	1.00[JPT][hapmap]
rs1465923	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4241591	0.82[CEU][hapmap]
rs4282210	1.00[JPT][hapmap]
rs7685696	1.00[JPT][hapmap]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77113200-77134000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:77113600-77134200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:77117000-77134000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:77117400-77132800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:77120000-77130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:77121400-77132800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:77121400-77133600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:77121400-77134000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:77121600-77131000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:77122200-77130800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:77122400-77133600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:77125200-77130000	Weak transcription	Spleen	Spleen
13	chr4:77127000-77130800	Enhancers	Placenta	Placenta
14	chr4:77127000-77131600	Enhancers	Fetal Heart	heart
15	chr4:77127600-77130000	Weak transcription	Gastric	stomach
16	chr4:77127600-77130000	Weak transcription	Lung	lung
17	chr4:77127600-77130200	Enhancers	HMEC	breast
18	chr4:77127800-77130200	Enhancers	Brain Germinal Matrix	brain
19	chr4:77127800-77130800	Enhancers	Fetal Muscle Leg	muscle
20	chr4:77128200-77130000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr4:77128400-77133200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr4:77128600-77130000	Active TSS	Right Atrium	heart
23	chr4:77128600-77130400	Enhancers	Fetal Brain Male	brain
24	chr4:77128600-77133000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr4:77128800-77130200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr4:77128800-77130400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr4:77128800-77133400	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr4:77128800-77133600	Enhancers	Small Intestine	intestine
29	chr4:77129000-77130000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:77129000-77130400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:77129000-77130400	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr4:77129200-77130000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:77129200-77130000	Active TSS	Psoas Muscle	Psoas
34	chr4:77129200-77130200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr4:77129200-77130200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr4:77129200-77130200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:77129200-77130200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr4:77129200-77130200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:77129200-77130200	Flanking Active TSS	Liver	Liver
40	chr4:77129200-77130200	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr4:77129200-77130200	Flanking Active TSS	Brain Cingulate Gyrus	brain
42	chr4:77129200-77130200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr4:77129200-77130200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr4:77129200-77130200	Flanking Active TSS	HepG2	liver
45	chr4:77129200-77130200	Flanking Active TSS	HSMM	muscle
46	chr4:77129200-77130200	Flanking Active TSS	NHEK	skin
47	chr4:77129200-77130200	Flanking Active TSS	Osteobl	bone
48	chr4:77129200-77130400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr4:77129200-77130400	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr4:77129200-77130400	Flanking Active TSS	Rectal Smooth Muscle	rectum

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