Variant report

Variant	rs10032423
Chromosome Location	chr4:77140733-77140734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77132355..77135308-chr4:77140194..77141852,2	K562	blood:
2	chr4:77138912..77140770-chr4:77143676..77145840,2	MCF-7	breast:
3	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
4	chr4:77132355..77137355-chr4:77138910..77145810,11	K562	blood:
5	chr4:77139213..77140887-chr4:77186776..77189495,2	K562	blood:
6	chr4:77140173..77141929-chr4:77155477..77157250,2	MCF-7	breast:
7	chr4:77139980..77142816-chr4:77143770..77146275,2	K562	blood:

Variant related genes	Relation type
ENSG00000189157	Chromatin interaction
ENSG00000138760	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12640185	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1465923	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1866975	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282210	1.00[JPT][hapmap]
rs55889442	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56153157	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59473442	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62303000	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7675963	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7685696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894250	1.00[JPT][hapmap]
rs9991301	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10032423	NAAA	cis	parietal	SCAN

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77135800-77141000	Enhancers	Psoas Muscle	Psoas
2	chr4:77135800-77142200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:77135800-77147400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:77136000-77142400	Enhancers	Fetal Intestine Large	intestine
5	chr4:77136000-77150600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:77136200-77142400	Enhancers	Liver	Liver
7	chr4:77136400-77141000	Enhancers	Fetal Lung	lung
8	chr4:77136600-77141000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr4:77136600-77142600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:77136600-77143200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:77137200-77140800	Weak transcription	Colonic Mucosa	Colon
12	chr4:77137200-77142400	Enhancers	Fetal Intestine Small	intestine
13	chr4:77138000-77141200	Enhancers	Adipose Nuclei	Adipose
14	chr4:77138400-77141400	Enhancers	Hela-S3	cervix
15	chr4:77138600-77150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:77138800-77140800	Weak transcription	Gastric	stomach
17	chr4:77138800-77140800	Weak transcription	Small Intestine	intestine
18	chr4:77138800-77155200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:77139000-77141000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr4:77139000-77146200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr4:77139000-77150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:77139600-77140800	Enhancers	Stomach Mucosa	stomach
23	chr4:77139800-77141000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr4:77139800-77141200	Enhancers	Osteobl	bone
25	chr4:77140000-77141000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:77140000-77141000	Enhancers	Duodenum Mucosa	Duodenum
27	chr4:77140000-77141000	Enhancers	Ovary	ovary
28	chr4:77140000-77141200	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr4:77140000-77141200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:77140000-77141200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr4:77140000-77141200	Enhancers	HepG2	liver
32	chr4:77140000-77141400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:77140000-77141400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:77140000-77141400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr4:77140200-77141000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:77140200-77141000	Enhancers	Esophagus	oesophagus
37	chr4:77140200-77141000	Enhancers	Placenta	Placenta
38	chr4:77140200-77141000	Enhancers	Lung	lung
39	chr4:77140200-77141000	Enhancers	Pancreas	Pancrea
40	chr4:77140200-77141200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:77140200-77141200	Enhancers	HMEC	breast
42	chr4:77140400-77140800	Enhancers	NHEK	skin
43	chr4:77140400-77141000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:77140400-77141000	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr4:77140400-77141000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:77140400-77141000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr4:77140400-77141000	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr4:77140400-77141000	Flanking Active TSS	A549	lung
49	chr4:77140400-77141200	Enhancers	NHDF-Ad	bronchial
50	chr4:77140400-77141200	Enhancers	NHLF	lung

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