Variant report

Variant	rs12640185
Chromosome Location	chr4:77132360-77132361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77129809..77132552-chr4:77141494..77144024,2	MCF-7	breast:
2	chr4:77062870..77064723-chr4:77131850..77133606,2	K562	blood:
3	chr4:77131893..77139465-chr4:77152630..77158664,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10032423	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1866975	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55889442	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56153157	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59473442	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62303000	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675963	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685696	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9991301	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77113200-77134000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:77113600-77134200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:77117000-77134000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:77117400-77132800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:77121400-77132800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:77121400-77133600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr4:77121400-77134000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:77122400-77133600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:77128400-77133200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:77128600-77133000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr4:77128800-77133400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr4:77128800-77133600	Enhancers	Small Intestine	intestine
13	chr4:77129800-77132800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr4:77129800-77133400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:77130000-77132600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:77130200-77132400	Weak transcription	Primary T cells from cord blood	blood
17	chr4:77130200-77132400	Enhancers	Right Atrium	heart
18	chr4:77130200-77132600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:77130200-77132600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:77130200-77132600	Enhancers	Psoas Muscle	Psoas
21	chr4:77130200-77132800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:77130200-77132800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr4:77130200-77132800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr4:77130200-77132800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr4:77130200-77132800	Enhancers	Stomach Mucosa	stomach
26	chr4:77130200-77132800	Weak transcription	K562	blood
27	chr4:77130200-77133000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:77130200-77133000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr4:77130200-77133000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr4:77130200-77133000	Weak transcription	A549	lung
31	chr4:77130200-77133200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:77130200-77133400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:77130200-77133400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr4:77130200-77133800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr4:77130200-77133800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr4:77130400-77132400	Enhancers	Rectal Smooth Muscle	rectum
37	chr4:77130400-77132400	Enhancers	HUVEC	blood vessel
38	chr4:77130400-77132400	Weak transcription	NH-A	brain
39	chr4:77130600-77132400	Enhancers	Primary B cells from cord blood	blood
40	chr4:77130800-77132800	Genic enhancers	Fetal Muscle Leg	muscle
41	chr4:77130800-77133600	Flanking Active TSS	Brain Cingulate Gyrus	brain
42	chr4:77130800-77133800	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr4:77130800-77134000	Enhancers	Primary B cells from peripheral blood	blood
44	chr4:77130800-77134000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr4:77130800-77134800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr4:77131000-77132400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr4:77131000-77132800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr4:77131000-77133000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:77131000-77133200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:77131000-77133400	Flanking Active TSS	Brain Hippocampus Middle	brain

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