Variant report

Variant	rs62303000
Chromosome Location	chr4:77137580-77137581
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:77137560-77138136	HL-60	blood:	n/a	chr4:77137871-77137884 chr4:77137873-77137882 chr4:77137872-77137885

No.	Distal block	Cell Line	Cell type
1	chr4:77135441..77137897-chr4:77152068..77153830,2	K562	blood:
2	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
3	chr4:77131893..77139465-chr4:77152630..77158664,14	MCF-7	breast:
4	chr4:77132690..77134987-chr4:77135558..77138954,3	K562	blood:

Variant related genes	Relation type
FAM47E	TF binding region
SCARB2	TF binding region
ENSG00000189157	Chromatin interaction
ENSG00000138760	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10032423	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12640185	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866975	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55889442	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56153157	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59473442	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675963	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685696	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9991301	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77135600-77138600	Weak transcription	Ovary	ovary
2	chr4:77135600-77138800	Enhancers	Placenta	Placenta
3	chr4:77135800-77138200	Weak transcription	HSMMtube	muscle
4	chr4:77135800-77138600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:77135800-77139000	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr4:77135800-77139800	Weak transcription	Osteobl	bone
7	chr4:77135800-77140000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:77135800-77141000	Enhancers	Psoas Muscle	Psoas
9	chr4:77135800-77142200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:77135800-77147400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:77136000-77138000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:77136000-77138200	Weak transcription	NHEK	skin
13	chr4:77136000-77138600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:77136000-77138600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:77136000-77139400	Enhancers	Fetal Muscle Leg	muscle
16	chr4:77136000-77139800	Weak transcription	A549	lung
17	chr4:77136000-77140000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:77136000-77140000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:77136000-77140400	Weak transcription	NHDF-Ad	bronchial
20	chr4:77136000-77140400	Weak transcription	NHLF	lung
21	chr4:77136000-77140600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:77136000-77142400	Enhancers	Fetal Intestine Large	intestine
23	chr4:77136000-77150600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:77136200-77137800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr4:77136200-77138000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:77136200-77138200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr4:77136200-77138200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr4:77136200-77138200	Weak transcription	HMEC	breast
29	chr4:77136200-77139000	Enhancers	HepG2	liver
30	chr4:77136200-77140200	Weak transcription	Right Atrium	heart
31	chr4:77136200-77142400	Enhancers	Liver	Liver
32	chr4:77136400-77137600	Weak transcription	Stomach Mucosa	stomach
33	chr4:77136400-77138200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:77136400-77138200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:77136400-77138400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:77136400-77138400	Weak transcription	Hela-S3	cervix
37	chr4:77136400-77138800	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr4:77136400-77139000	Enhancers	Duodenum Mucosa	Duodenum
39	chr4:77136400-77140000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:77136400-77140000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr4:77136400-77140200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:77136400-77140400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr4:77136400-77140400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr4:77136400-77140400	Weak transcription	Brain Hippocampus Middle	brain
45	chr4:77136400-77140600	Weak transcription	Colon Smooth Muscle	Colon
46	chr4:77136400-77141000	Enhancers	Fetal Lung	lung
47	chr4:77136600-77138000	Weak transcription	Adipose Nuclei	Adipose
48	chr4:77136600-77138000	Weak transcription	Fetal Heart	heart
49	chr4:77136600-77138200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:77136600-77138200	Weak transcription	Gastric	stomach

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