Variant report

Variant	rs56153157
Chromosome Location	chr4:77141118-77141119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77132355..77135308-chr4:77140194..77141852,2	K562	blood:
2	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
3	chr4:77132355..77137355-chr4:77138910..77145810,11	K562	blood:
4	chr4:77141026..77143945-chr4:77145539..77147630,3	MCF-7	breast:
5	chr4:77140173..77141929-chr4:77155477..77157250,2	MCF-7	breast:
6	chr4:77139980..77142816-chr4:77143770..77146275,2	K562	blood:

Variant related genes	Relation type
ENSG00000138760	Chromatin interaction
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10032423	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12640185	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866975	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55889442	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59473442	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62303000	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685696	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9991301	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77135800-77142200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:77135800-77147400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:77136000-77142400	Enhancers	Fetal Intestine Large	intestine
4	chr4:77136000-77150600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:77136200-77142400	Enhancers	Liver	Liver
6	chr4:77136600-77142600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:77136600-77143200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:77137200-77142400	Enhancers	Fetal Intestine Small	intestine
9	chr4:77138000-77141200	Enhancers	Adipose Nuclei	Adipose
10	chr4:77138400-77141400	Enhancers	Hela-S3	cervix
11	chr4:77138600-77150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:77138800-77155200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:77139000-77146200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:77139000-77150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:77139800-77141200	Enhancers	Osteobl	bone
16	chr4:77140000-77141200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr4:77140000-77141200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:77140000-77141200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr4:77140000-77141200	Enhancers	HepG2	liver
20	chr4:77140000-77141400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:77140000-77141400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:77140000-77141400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr4:77140200-77141200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:77140200-77141200	Enhancers	HMEC	breast
25	chr4:77140400-77141200	Enhancers	NHDF-Ad	bronchial
26	chr4:77140400-77141200	Enhancers	NHLF	lung
27	chr4:77141000-77141200	Enhancers	A549	lung
28	chr4:77141000-77142000	Weak transcription	Pancreas	Pancrea
29	chr4:77141000-77142200	Weak transcription	Lung	lung
30	chr4:77141000-77142400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr4:77141000-77147400	Weak transcription	Duodenum Mucosa	Duodenum

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