Variant report

Variant	rs894368
Chromosome Location	chr4:100309313-100309314
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12501721	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12505678	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17028965	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2197147	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2584456	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2584457	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2584458	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2584459	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2584461	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2646008	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2646012	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2646013	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2654834	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2851016	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2851017	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2851292	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2851293	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2851294	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6835524	0.90[AMR][1000 genomes]
rs72681931	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879656	chr4:99976646-100533722	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3355763	chr4:100070566-100376814	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1014237	chr4:100102701-100365700	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1010988	chr4:100105463-100444445	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1000659	chr4:100117276-100444445	Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv999549	chr4:100121609-100351749	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3353320	chr4:100147870-100425701	Genic enhancers ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv3394995	chr4:100147890-100425671	Enhancers Genic enhancers Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv879659	chr4:100260789-100349135	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv879660	chr4:100284199-100380148	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100305400-100310800	Weak transcription	Pancreas	Pancrea
2	chr4:100305600-100310800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:100306200-100310800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:100306800-100310600	Weak transcription	Osteobl	bone
5	chr4:100306800-100310800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:100306800-100310800	Weak transcription	NHLF	lung
7	chr4:100307800-100311000	Enhancers	Stomach Mucosa	stomach
8	chr4:100309000-100312000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:100309000-100312200	Enhancers	NHDF-Ad	bronchial
10	chr4:100309000-100313600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links