Variant report

Variant	rs895654
Chromosome Location	chr11:119779459-119779460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119776418..119778910-chr11:119779204..119783369,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11217615	0.91[AMR][1000 genomes]
rs11217618	0.83[AMR][1000 genomes]
rs11822704	0.91[AMR][1000 genomes]
rs11822761	0.91[AMR][1000 genomes]
rs11824025	0.91[AMR][1000 genomes]
rs11825175	0.91[AMR][1000 genomes]
rs12280147	0.91[AMR][1000 genomes]
rs12283906	0.91[AMR][1000 genomes]
rs12283919	0.91[AMR][1000 genomes]
rs12286917	0.91[AMR][1000 genomes]
rs12293370	0.83[AMR][1000 genomes]
rs35034058	0.91[AMR][1000 genomes]
rs59415047	0.83[AMR][1000 genomes]
rs60650014	0.83[AMR][1000 genomes]
rs7125520	0.83[AMR][1000 genomes]
rs7131561	0.83[AMR][1000 genomes]
rs7948649	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs895655	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1044698	chr11:119767614-119789683	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1051760	chr11:119770181-119789683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1048084	chr11:119771748-119808864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv275318	chr11:119775811-119785360	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119763000-119780800	Weak transcription	Right Atrium	heart
2	chr11:119772600-119779800	Enhancers	Liver	Liver
3	chr11:119775200-119780200	Enhancers	Placenta	Placenta
4	chr11:119775400-119780400	Weak transcription	Gastric	stomach
5	chr11:119775800-119781400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:119776800-119780000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:119777000-119779600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:119777000-119779800	Enhancers	Fetal Lung	lung
9	chr11:119777000-119780000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:119777200-119780000	Enhancers	Fetal Brain Male	brain
11	chr11:119777200-119782600	Enhancers	Fetal Heart	heart
12	chr11:119777600-119779800	Enhancers	Esophagus	oesophagus
13	chr11:119777600-119783000	Enhancers	Brain Angular Gyrus	brain
14	chr11:119777800-119779600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:119777800-119779600	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr11:119777800-119781800	Enhancers	Brain Germinal Matrix	brain
17	chr11:119778000-119779600	Bivalent Enhancer	Fetal Stomach	stomach
18	chr11:119778000-119779800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:119778000-119780000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:119778000-119780400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:119778200-119779600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:119778200-119783200	Enhancers	Brain Cingulate Gyrus	brain
23	chr11:119778400-119780200	Enhancers	Fetal Brain Female	brain
24	chr11:119778400-119780800	Weak transcription	Pancreas	Pancrea
25	chr11:119778400-119780800	Weak transcription	Right Ventricle	heart
26	chr11:119778400-119781000	Weak transcription	Spleen	Spleen
27	chr11:119778400-119781600	Enhancers	Brain Anterior Caudate	brain
28	chr11:119778400-119783000	Enhancers	Brain Hippocampus Middle	brain
29	chr11:119778400-119783000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:119778400-119783200	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr11:119778600-119781800	Enhancers	Stomach Mucosa	stomach
32	chr11:119778600-119782200	Enhancers	Fetal Intestine Large	intestine
33	chr11:119778800-119782000	Enhancers	Brain Substantia Nigra	brain
34	chr11:119779200-119779600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr11:119779200-119779600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr11:119779400-119781800	Enhancers	Colonic Mucosa	Colon
37	chr11:119779400-119782000	Enhancers	Duodenum Mucosa	Duodenum
38	chr11:119779400-119782000	Enhancers	Fetal Intestine Small	intestine

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