Variant report

Variant	rs11822704
Chromosome Location	chr11:119861581-119861582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119599184..119600753-chr11:119861551..119864175,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110400	Chromatin interaction
ENSG00000254854	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11217615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217618	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11822515	0.84[AMR][1000 genomes]
rs11822761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824025	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280147	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283906	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283919	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286917	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293370	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs35034058	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59415047	0.91[AMR][1000 genomes]
rs60650014	0.91[AMR][1000 genomes]
rs7110709	0.84[AMR][1000 genomes]
rs7125377	0.84[AMR][1000 genomes]
rs7125520	0.91[AMR][1000 genomes]
rs7125556	0.84[AMR][1000 genomes]
rs7131561	0.91[AMR][1000 genomes]
rs7948649	0.91[AMR][1000 genomes]
rs895654	0.91[AMR][1000 genomes]
rs895655	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035918	chr11:119853069-119879255	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119854200-119862200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:119854600-119861800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:119856600-119863000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:119858600-119861600	Enhancers	Fetal Heart	heart
5	chr11:119858800-119863200	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:119859000-119863200	Enhancers	Brain Anterior Caudate	brain
7	chr11:119859000-119864400	Enhancers	Brain Angular Gyrus	brain
8	chr11:119859000-119867000	Enhancers	Brain Substantia Nigra	brain
9	chr11:119859000-119867600	Enhancers	Brain Hippocampus Middle	brain
10	chr11:119859000-119867600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:119859200-119862000	Enhancers	Brain Germinal Matrix	brain
12	chr11:119859200-119862000	Enhancers	Fetal Brain Male	brain
13	chr11:119859400-119862600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:119860000-119861600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr11:119860200-119861600	Enhancers	Ovary	ovary
16	chr11:119860200-119862000	Enhancers	Fetal Lung	lung
17	chr11:119860200-119862400	Enhancers	Right Ventricle	heart
18	chr11:119860400-119861600	Enhancers	Fetal Intestine Small	intestine
19	chr11:119860600-119862000	Enhancers	Spleen	Spleen
20	chr11:119860800-119861600	Enhancers	Adipose Nuclei	Adipose
21	chr11:119860800-119862200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:119860800-119862400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:119860800-119864800	Enhancers	Duodenum Mucosa	Duodenum
24	chr11:119860800-119869400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr11:119861000-119861600	Enhancers	Gastric	stomach
26	chr11:119861000-119861600	Enhancers	Left Ventricle	heart
27	chr11:119861000-119861600	Enhancers	Right Atrium	heart
28	chr11:119861000-119861800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr11:119861000-119866400	Enhancers	Esophagus	oesophagus
30	chr11:119861200-119861600	Enhancers	Psoas Muscle	Psoas
31	chr11:119861400-119861600	Bivalent Enhancer	Fetal Stomach	stomach
32	chr11:119861400-119861800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:119861400-119861800	Enhancers	Pancreas	Pancrea
34	chr11:119861400-119862000	Bivalent Enhancer	Fetal Muscle Leg	muscle
35	chr11:119861400-119864000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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