Variant report

Variant	rs11822515
Chromosome Location	chr11:119866315-119866316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119853779..119856334-chr11:119866020..119869388,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11217615	0.84[AMR][1000 genomes]
rs11217619	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11217620	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11217621	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11217622	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11217625	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11217627	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11822704	0.84[AMR][1000 genomes]
rs11822761	0.84[AMR][1000 genomes]
rs11824025	0.84[AMR][1000 genomes]
rs11825175	0.84[AMR][1000 genomes]
rs11825934	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11825954	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11828327	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12277627	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12280147	0.84[AMR][1000 genomes]
rs12283906	0.84[AMR][1000 genomes]
rs12283919	0.84[AMR][1000 genomes]
rs12286917	0.84[AMR][1000 genomes]
rs13377460	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13377464	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13377571	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs35034058	0.84[AMR][1000 genomes]
rs58030968	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7106560	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7110709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119315	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7119397	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7119762	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7119865	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7119877	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7120110	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7125377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586071	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7924586	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7932064	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7937531	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7941864	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7945097	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7945351	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7945376	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7950202	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035918	chr11:119853069-119879255	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119859000-119867000	Enhancers	Brain Substantia Nigra	brain
2	chr11:119859000-119867600	Enhancers	Brain Hippocampus Middle	brain
3	chr11:119859000-119867600	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr11:119860800-119869400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:119861000-119866400	Enhancers	Esophagus	oesophagus
6	chr11:119862000-119871400	Weak transcription	Brain Germinal Matrix	brain
7	chr11:119863600-119866600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:119864200-119867600	Enhancers	Brain Cingulate Gyrus	brain
9	chr11:119864800-119871600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:119865000-119866400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:119865600-119867000	Enhancers	Brain Anterior Caudate	brain
12	chr11:119866000-119866600	Enhancers	Brain Angular Gyrus	brain
13	chr11:119866200-119866400	Enhancers	Fetal Brain Male	brain
14	chr11:119866200-119866800	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links