Variant report

Variant	rs7119762
Chromosome Location	chr11:119869901-119869902
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:119869880-119870030	HBMEC	blood vessel:	n/a	n/a
2	ELF1	chr11:119869894-119870342	HCT-116	colon:	n/a	chr11:119870182-119870195
3	E2F6	chr11:119869842-119870213	H1-hESC	embryonic stem cell:	n/a	n/a
4	MAX	chr11:119869893-119870240	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr11:119869780-119869930	SAEC	small airway:	n/a	n/a
6	CTCF	chr11:119869892-119870410	HCT-116	colon:	n/a	n/a
7	E2F6	chr11:119869795-119870343	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000254863	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11217619	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217620	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217621	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217622	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217625	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217627	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822515	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11825934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277627	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58030968	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7106560	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110709	0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7119315	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119397	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7120110	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125377	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7125556	0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73586071	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7924586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7932064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7937531	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7941864	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945097	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945376	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7950202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035918	chr11:119853069-119879255	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119862000-119871400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:119864800-119871600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:119866400-119880200	Weak transcription	Esophagus	oesophagus
4	chr11:119866600-119871600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:119867000-119871200	Weak transcription	Brain Substantia Nigra	brain
6	chr11:119867600-119870600	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:119867600-119871400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:119867600-119871400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:119869400-119871000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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