Variant report

Variant	rs7950202
Chromosome Location	chr11:119872246-119872247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119855228..119858162-chr11:119871012..119872668,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11217619	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217620	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217621	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217622	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217625	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217627	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822515	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11825934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277627	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58030968	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7106560	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110709	0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7119315	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119397	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119762	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7120110	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125377	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7125556	0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73586071	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7924586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7932064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7937531	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7941864	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945097	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945376	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035918	chr11:119853069-119879255	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119866400-119880200	Weak transcription	Esophagus	oesophagus
2	chr11:119870600-119873800	Enhancers	Brain Hippocampus Middle	brain
3	chr11:119871000-119877200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:119871200-119873200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:119871200-119873400	Enhancers	Brain Substantia Nigra	brain
6	chr11:119871400-119872800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:119871400-119873400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:119871400-119873400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:119871400-119873400	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:119871400-119873800	Enhancers	Brain Germinal Matrix	brain
11	chr11:119871600-119872400	Enhancers	Brain Angular Gyrus	brain
12	chr11:119871600-119872400	Enhancers	Fetal Brain Male	brain
13	chr11:119871600-119872800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:119871600-119873200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr11:119871600-119873200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr11:119871600-119873200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:119871600-119873200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr11:119871600-119873600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:119871800-119872400	Bivalent Enhancer	Dnd41	blood
20	chr11:119871800-119872800	Enhancers	Fetal Muscle Leg	muscle
21	chr11:119871800-119873000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
22	chr11:119871800-119873000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:119871800-119873200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:119871800-119873200	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr11:119872000-119872400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:119872000-119872400	Enhancers	Fetal Brain Female	brain
27	chr11:119872000-119872400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr11:119872000-119873600	Enhancers	Brain Anterior Caudate	brain
29	chr11:119872200-119872400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:119872200-119873000	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr11:119872200-119880200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links