Variant report

Variant	rs73586071
Chromosome Location	chr11:119873530-119873531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119867354..119869206-chr11:119872754..119874804,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11217619	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217620	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217621	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217622	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822515	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11825934	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825954	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828327	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377460	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377464	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377571	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58030968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7106560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110709	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7119315	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119397	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119762	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119865	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119877	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7120110	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125377	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7125556	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7924586	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7932064	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7937531	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7941864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945097	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945351	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945376	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7950202	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035918	chr11:119853069-119879255	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv524406	chr11:119873404-119893179	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119866400-119880200	Weak transcription	Esophagus	oesophagus
2	chr11:119870600-119873800	Enhancers	Brain Hippocampus Middle	brain
3	chr11:119871000-119877200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:119871400-119873800	Enhancers	Brain Germinal Matrix	brain
5	chr11:119871600-119873600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:119872000-119873600	Enhancers	Brain Anterior Caudate	brain
7	chr11:119872200-119880200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:119872400-119873800	Enhancers	Fetal Kidney	kidney
9	chr11:119872800-119873600	Enhancers	Brain Angular Gyrus	brain
10	chr11:119873000-119875400	Weak transcription	HMEC	breast
11	chr11:119873200-119873600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr11:119873200-119875400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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