Variant report
| Variant | rs897086 |
|---|---|
| Chromosome Location | chr4:91708016-91708017 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs11097264 | 0.85[AFR][1000 genomes] |
| rs11722100 | 0.92[ASN][1000 genomes] |
| rs11726340 | 0.88[ASN][1000 genomes] |
| rs11730172 | 0.88[ASN][1000 genomes] |
| rs11730314 | 0.86[ASN][1000 genomes] |
| rs11731445 | 0.85[ASN][1000 genomes] |
| rs12503263 | 0.87[ASN][1000 genomes] |
| rs1377916 | 0.84[ASN][1000 genomes] |
| rs1454341 | 0.85[AFR][1000 genomes] |
| rs1598146 | 0.85[AFR][1000 genomes] |
| rs1598147 | 0.85[AFR][1000 genomes] |
| rs1606752 | 0.87[ASN][1000 genomes] |
| rs17184632 | 0.88[ASN][1000 genomes] |
| rs17185779 | 0.86[ASN][1000 genomes] |
| rs17186550 | 0.92[ASN][1000 genomes] |
| rs17245295 | 0.84[ASN][1000 genomes] |
| rs17245443 | 0.84[ASN][1000 genomes] |
| rs17245485 | 0.85[ASN][1000 genomes] |
| rs2168075 | 0.85[ASN][1000 genomes] |
| rs2271592 | 0.80[ASN][1000 genomes] |
| rs2870264 | 0.88[ASN][1000 genomes] |
| rs4423844 | 0.88[ASN][1000 genomes] |
| rs4597790 | 0.87[ASN][1000 genomes] |
| rs59614972 | 0.87[ASN][1000 genomes] |
| rs62313023 | 0.91[ASN][1000 genomes] |
| rs62313024 | 0.86[ASN][1000 genomes] |
| rs6532239 | 0.88[ASN][1000 genomes] |
| rs6532241 | 0.86[ASN][1000 genomes] |
| rs6532242 | 0.84[ASN][1000 genomes] |
| rs6532243 | 0.89[ASN][1000 genomes] |
| rs6811504 | 0.90[ASN][1000 genomes] |
| rs6835028 | 0.86[ASN][1000 genomes] |
| rs7661466 | 0.88[ASN][1000 genomes] |
| rs7664025 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7670480 | 0.87[ASN][1000 genomes] |
| rs7687983 | 0.87[ASN][1000 genomes] |
| rs897088 | 0.88[ASN][1000 genomes] |
| rs976483 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931074 | chr4:90970476-91753697 | Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv534470 | chr4:91342219-91842807 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv428766 | chr4:91618397-91768647 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv879552 | chr4:91691313-91729462 | Enhancers Active TSS Weak transcription ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv879553 | chr4:91691313-91868576 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv879554 | chr4:91692287-91731886 | Enhancers Weak transcription Active TSS ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:91700400-91713000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
