Variant report

Variant	rs897808
Chromosome Location	chr5:41435715-41435716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10038417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1457128	0.82[YRI][hapmap]
rs2124941	0.82[YRI][hapmap]
rs2859816	0.80[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs897808	PRKAA1	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41431000-41440000	Enhancers	Fetal Heart	heart
2	chr5:41433800-41436200	Enhancers	Pancreas	Pancrea
3	chr5:41435200-41435800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:41435400-41435800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:41435400-41436000	Enhancers	Fetal Intestine Small	intestine
6	chr5:41435400-41436200	Enhancers	Ovary	ovary
7	chr5:41435400-41436200	Enhancers	Right Atrium	heart
8	chr5:41435400-41436800	Enhancers	Left Ventricle	heart
9	chr5:41435600-41436200	Enhancers	Right Ventricle	heart
10	chr5:41435600-41447000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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