Variant report

Variant	rs2859816
Chromosome Location	chr5:41494889-41494890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10462022	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10941542	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12517050	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12518582	0.98[ASN][1000 genomes]
rs12521712	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12655176	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16871412	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16871449	0.98[ASN][1000 genomes]
rs17207595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs318019	0.99[ASN][1000 genomes]
rs318020	0.99[ASN][1000 genomes]
rs318021	0.89[CHB][hapmap]
rs3851440	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3851441	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3851442	0.98[ASN][1000 genomes]
rs3913717	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3913718	0.97[ASN][1000 genomes]
rs3913719	0.97[ASN][1000 genomes]
rs3913720	0.97[ASN][1000 genomes]
rs4559040	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4588635	0.83[CHB][hapmap]
rs55803511	0.98[ASN][1000 genomes]
rs56182059	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57159430	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58203282	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59751170	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs627744	0.90[CHB][hapmap]
rs6870727	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694218	0.89[CHB][hapmap]
rs7703079	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7723565	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs897808	0.80[JPT][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41486200-41497200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:41494400-41495200	Weak transcription	Left Ventricle	heart
3	chr5:41494400-41504600	Weak transcription	Ovary	ovary
4	chr5:41494800-41495000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:41494800-41496000	Enhancers	Fetal Heart	heart

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