Variant report

Variant	rs3913718
Chromosome Location	chr5:41527169-41527170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10462022	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12517050	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12518582	0.98[ASN][1000 genomes]
rs12655176	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16871412	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16871449	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17207595	0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2859816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs318019	0.97[ASN][1000 genomes]
rs318020	0.97[ASN][1000 genomes]
rs318021	0.82[CHB][hapmap]
rs3851440	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3851441	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3851442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3913717	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3913719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3913720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559040	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs55803511	0.98[ASN][1000 genomes]
rs56182059	0.89[ASN][1000 genomes]
rs57159430	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs58203282	0.97[ASN][1000 genomes]
rs59751170	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs627744	0.82[CHB][hapmap]
rs6870727	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs694218	0.82[CHB][hapmap]
rs7703079	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41523400-41527800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:41526200-41527800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:41526200-41528400	Enhancers	Placenta	Placenta
4	chr5:41526400-41527400	Enhancers	NH-A	brain
5	chr5:41526400-41527600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:41526400-41527800	Weak transcription	Aorta	Aorta
7	chr5:41526400-41528400	Enhancers	HSMMtube	muscle
8	chr5:41526600-41527400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:41526600-41527800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr5:41526600-41528200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:41526800-41527200	Enhancers	Fetal Heart	heart
12	chr5:41526800-41527400	Enhancers	HSMM	muscle
13	chr5:41526800-41528000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:41526800-41528000	Enhancers	HMEC	breast
15	chr5:41526800-41528200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:41526800-41528200	Enhancers	Osteobl	bone
17	chr5:41527000-41527400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr5:41527000-41527400	Enhancers	NHLF	lung
19	chr5:41527000-41528000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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