Variant report

Variant	rs3851442
Chromosome Location	chr5:41522410-41522411
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41519924..41522470-chr5:41537581..41539242,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10462022	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12517050	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12518582	1.00[ASN][1000 genomes]
rs12655176	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16871412	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs16871449	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17207595	0.89[CHB][hapmap];0.89[JPT][hapmap];0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2859816	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs318019	0.99[ASN][1000 genomes]
rs318020	0.99[ASN][1000 genomes]
rs3851440	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3851441	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3913717	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3913718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3913719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3913720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4559040	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs55803511	1.00[ASN][1000 genomes]
rs56182059	0.91[ASN][1000 genomes]
rs57159430	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58203282	0.99[ASN][1000 genomes]
rs59751170	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6870727	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7703079	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41522000-41523200	Weak transcription	Fetal Heart	heart
2	chr5:41522200-41523000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:41522200-41523000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:41522200-41523200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:41522400-41522800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:41522400-41523000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:41522400-41523000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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