Variant report

Variant	rs318021
Chromosome Location	chr5:41499264-41499265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10805660	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11749681	0.91[LWK][hapmap]
rs12187650	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1457133	0.83[ASW][hapmap];0.96[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17207595	0.90[CHB][hapmap]
rs2644043	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2644044	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2859816	0.89[CHB][hapmap]
rs318017	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs318019	0.84[AMR][1000 genomes]
rs318020	0.81[AMR][1000 genomes]
rs318041	0.83[ASW][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3913727	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4106195	0.94[ASN][1000 genomes]
rs4588635	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs4957156	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4957158	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs508669	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs523442	0.83[ASW][hapmap];0.96[CEU][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55803511	0.80[AMR][1000 genomes]
rs581905	0.87[JPT][hapmap];0.90[YRI][hapmap]
rs611647	0.82[JPT][hapmap];0.90[YRI][hapmap]
rs627744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694218	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1985937	chr5:41499264-41499265	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41494400-41504600	Weak transcription	Ovary	ovary
2	chr5:41495800-41507000	Weak transcription	Left Ventricle	heart
3	chr5:41497800-41504000	Enhancers	Fetal Heart	heart
4	chr5:41498400-41500000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:41498600-41499600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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