Variant report

Variant	rs523442
Chromosome Location	chr5:41478178-41478179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10805660	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11749681	0.97[LWK][hapmap];0.82[AFR][1000 genomes]
rs12187650	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1457133	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2644043	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2644044	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs318017	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs318021	0.83[ASW][hapmap];0.96[CEU][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs318041	0.83[ASW][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4588635	0.84[CHD][hapmap]
rs4957156	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4957158	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs508669	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs581905	0.87[JPT][hapmap]
rs611647	0.82[JPT][hapmap]
rs627744	0.96[CEU][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs694218	0.96[CEU][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.80[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs523442	ZFAND1	trans	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41452800-41494000	Weak transcription	Ovary	ovary
2	chr5:41472800-41481400	Weak transcription	Fetal Heart	heart
3	chr5:41473800-41478400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:41477600-41479000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:41477800-41485600	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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