Variant report

Variant	rs12187650
Chromosome Location	chr5:41541701-41541702
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41516760..41518926-chr5:41541317..41543244,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10805660	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11749681	0.82[LWK][hapmap]
rs1457133	0.96[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17207595	0.85[CHB][hapmap]
rs2644043	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2644044	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2859816	0.89[CHB][hapmap]
rs318017	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs318021	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs318041	0.86[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.84[AMR][1000 genomes]
rs3913727	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4106195	0.92[ASN][1000 genomes]
rs4588635	0.91[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs4957156	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4957158	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs508669	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs523442	0.96[CEU][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55803511	0.80[AMR][1000 genomes]
rs581905	0.91[JPT][hapmap]
rs611647	0.86[JPT][hapmap]
rs627744	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs694218	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028390	chr5:41537220-41561373	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41541600-41542400	Enhancers	Left Ventricle	heart

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