Variant report

Variant	rs10941542
Chromosome Location	chr5:41480086-41480087
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10462022	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12517050	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12521712	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12655176	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16871412	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17207595	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2859816	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3851440	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3851441	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3913717	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4559040	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56182059	0.93[EUR][1000 genomes]
rs57159430	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58203282	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59751170	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6870727	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7703079	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7723565	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41452800-41494000	Weak transcription	Ovary	ovary
2	chr5:41472800-41481400	Weak transcription	Fetal Heart	heart
3	chr5:41477800-41485600	Weak transcription	Left Ventricle	heart
4	chr5:41479600-41481800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:41479800-41482400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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