Variant report

Variant	rs12521712
Chromosome Location	chr5:41453634-41453635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10462022	0.85[AMR][1000 genomes]
rs10941542	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12517050	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12655176	0.86[AMR][1000 genomes]
rs16871412	0.84[AMR][1000 genomes]
rs17207595	0.84[AMR][1000 genomes]
rs2859816	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3851440	0.85[AMR][1000 genomes]
rs3851441	0.85[AMR][1000 genomes]
rs3913717	0.85[AMR][1000 genomes]
rs4559040	0.85[AMR][1000 genomes]
rs56182059	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57159430	0.85[AMR][1000 genomes]
rs58203282	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59751170	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6870727	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7703079	0.83[AMR][1000 genomes]
rs7723565	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41443600-41456200	Enhancers	Fetal Heart	heart
2	chr5:41448600-41453800	Weak transcription	Left Ventricle	heart
3	chr5:41450800-41453800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr5:41451000-41454600	Weak transcription	Right Ventricle	heart
5	chr5:41452800-41457600	Weak transcription	Fetal Intestine Large	intestine
6	chr5:41452800-41494000	Weak transcription	Ovary	ovary
7	chr5:41453400-41455000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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