Variant report

Variant	rs897809
Chromosome Location	chr5:41435950-41435951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10512770	0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1457128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2124940	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2124941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs318056	0.86[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs318058	0.86[ASN][1000 genomes]
rs318060	0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs318061	0.87[ASN][1000 genomes]
rs487764	0.86[CHB][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41431000-41440000	Enhancers	Fetal Heart	heart
2	chr5:41433800-41436200	Enhancers	Pancreas	Pancrea
3	chr5:41435400-41436000	Enhancers	Fetal Intestine Small	intestine
4	chr5:41435400-41436200	Enhancers	Ovary	ovary
5	chr5:41435400-41436200	Enhancers	Right Atrium	heart
6	chr5:41435400-41436800	Enhancers	Left Ventricle	heart
7	chr5:41435600-41436200	Enhancers	Right Ventricle	heart
8	chr5:41435600-41447000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:41435800-41447200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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