Variant report

Variant	rs318060
Chromosome Location	chr5:41439239-41439240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10512770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1457128	0.86[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs2124940	0.96[ASN][1000 genomes]
rs2124941	0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs2446961	0.88[CEU][hapmap]
rs318056	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs318058	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs318061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318064	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs487764	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6451576	0.87[CEU][hapmap]
rs7714031	0.85[TSI][hapmap]
rs897809	0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41431000-41440000	Enhancers	Fetal Heart	heart
2	chr5:41435600-41447000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:41435800-41447200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:41436200-41447600	Weak transcription	Right Ventricle	heart
5	chr5:41436200-41451800	Weak transcription	Ovary	ovary
6	chr5:41438800-41445400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:41438800-41446400	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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