Variant report

Variant	rs6451576
Chromosome Location	chr5:41473439-41473440
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10057833	0.87[EUR][1000 genomes]
rs10060029	0.85[EUR][1000 genomes]
rs10063143	0.87[EUR][1000 genomes]
rs10063880	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs10075789	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs10941543	0.85[EUR][1000 genomes]
rs11951028	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs1379309	0.87[ASN][1000 genomes]
rs1379310	0.84[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs1457130	0.86[ASN][1000 genomes]
rs1457132	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1565968	0.88[ASN][1000 genomes]
rs1598738	0.87[EUR][1000 genomes]
rs172753	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1827692	0.87[EUR][1000 genomes]
rs2124942	0.88[ASN][1000 genomes]
rs2124943	0.88[ASN][1000 genomes]
rs2445888	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2446961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2644046	0.87[EUR][1000 genomes]
rs2876922	0.87[EUR][1000 genomes]
rs318056	0.87[CEU][hapmap]
rs318060	0.87[CEU][hapmap]
rs318069	1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[ASN][1000 genomes]
rs318070	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs318074	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[ASN][1000 genomes]
rs318075	0.96[ASN][1000 genomes]
rs318076	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs318077	0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs318080	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs318082	0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs318083	0.92[ASN][1000 genomes]
rs318085	0.92[ASN][1000 genomes]
rs318089	0.94[ASN][1000 genomes]
rs3844180	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs3863150	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs566188	0.87[EUR][1000 genomes]
rs602985	0.87[EUR][1000 genomes]
rs603855	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs624733	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs628092	0.87[EUR][1000 genomes]
rs655419	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs661518	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs662066	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs664232	0.87[EUR][1000 genomes]
rs675451	0.87[EUR][1000 genomes]
rs676328	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs685542	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs6871147	0.87[EUR][1000 genomes]
rs6877159	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs688551	0.87[EUR][1000 genomes]
rs6895255	0.87[EUR][1000 genomes]
rs7700933	0.87[EUR][1000 genomes]
rs7714031	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs7724484	0.86[ASN][1000 genomes]
rs822138	0.87[EUR][1000 genomes]
rs822139	0.87[EUR][1000 genomes]
rs822141	0.87[EUR][1000 genomes]
rs822146	0.87[EUR][1000 genomes]
rs861980	0.87[EUR][1000 genomes]
rs9292809	0.88[CEU][hapmap];0.87[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41452800-41494000	Weak transcription	Ovary	ovary
2	chr5:41462200-41475000	Weak transcription	Left Ventricle	heart
3	chr5:41470600-41473800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:41472800-41481400	Weak transcription	Fetal Heart	heart
5	chr5:41473200-41474600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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