Variant report

Variant	rs9292809
Chromosome Location	chr5:41510235-41510236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10057833	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060029	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10063143	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10063880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10941543	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11951028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1598738	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs172753	0.80[YRI][hapmap]
rs1827692	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2219354	1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs2446961	0.89[CEU][hapmap]
rs2644046	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318018	1.00[ASN][1000 genomes]
rs318082	0.85[YRI][hapmap]
rs3863150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566188	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602985	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628092	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451576	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs655419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664232	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675451	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs685542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871147	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6877159	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688551	0.90[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895255	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7700933	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs822138	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs822139	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs822141	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs822146	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs861980	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv969281	chr5:41509672-41514269	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41505600-41511400	Active TSS	Right Atrium	heart
2	chr5:41505800-41511400	Active TSS	Right Ventricle	heart
3	chr5:41506800-41511000	Active TSS	Ovary	ovary
4	chr5:41507800-41511200	Active TSS	Left Ventricle	heart
5	chr5:41508000-41511000	Active TSS	Fetal Heart	heart
6	chr5:41508200-41511400	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr5:41508400-41511000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:41509400-41510400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
9	chr5:41509400-41510400	Bivalent/Poised TSS	Fetal Brain Male	brain
10	chr5:41509400-41510400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
11	chr5:41509400-41510600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
12	chr5:41509400-41510800	Flanking Active TSS	Pancreas	Pancrea
13	chr5:41509400-41511000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr5:41509400-41511200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr5:41509400-41511200	Active TSS	Brain Substantia Nigra	brain
16	chr5:41509600-41510400	Active TSS	Esophagus	oesophagus
17	chr5:41509600-41510600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:41509600-41510600	Flanking Active TSS	Lung	lung
19	chr5:41509600-41510600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
20	chr5:41509600-41510800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:41509600-41510800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
22	chr5:41509600-41510800	ZNF genes & repeats	Spleen	Spleen
23	chr5:41509600-41511000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr5:41509600-41511000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
25	chr5:41509800-41510400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
26	chr5:41509800-41510400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr5:41509800-41510400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:41509800-41510400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr5:41509800-41510400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
30	chr5:41509800-41510400	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
31	chr5:41509800-41510600	Bivalent Enhancer	Placenta	Placenta
32	chr5:41509800-41510800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr5:41509800-41510800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
34	chr5:41509800-41510800	Bivalent/Poised TSS	Colonic Mucosa	Colon
35	chr5:41509800-41510800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
36	chr5:41509800-41511200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
37	chr5:41509800-41511200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
38	chr5:41509800-41511200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
39	chr5:41509800-41511200	Active TSS	Aorta	Aorta
40	chr5:41509800-41511200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
41	chr5:41509800-41511200	Bivalent Enhancer	Fetal Lung	lung
42	chr5:41510000-41510400	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr5:41510000-41510400	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:41510000-41510400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
45	chr5:41510000-41510400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
46	chr5:41510000-41510600	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
47	chr5:41510000-41510800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr5:41510000-41510800	Flanking Active TSS	Placenta Amnion	Placenta Amnion
49	chr5:41510000-41510800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
50	chr5:41510000-41510800	Bivalent/Poised TSS	NHLF	lung

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