Variant report

Variant	rs172753
Chromosome Location	chr5:41473865-41473866
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11951028	0.85[AFR][1000 genomes]
rs13155221	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1379309	0.92[ASN][1000 genomes]
rs1379310	1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs1457130	0.90[ASN][1000 genomes]
rs1457132	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1565968	0.93[ASN][1000 genomes]
rs2124942	0.93[ASN][1000 genomes]
rs2124943	0.93[ASN][1000 genomes]
rs2219354	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2445888	0.93[ASN][1000 genomes]
rs2446961	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs318069	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs318070	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs318074	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs318075	0.89[ASN][1000 genomes]
rs318076	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs318077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs318080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs318082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs318083	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs318085	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs318089	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3844180	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs6451576	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7724484	0.91[ASN][1000 genomes]
rs9292809	0.80[YRI][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41452800-41494000	Weak transcription	Ovary	ovary
2	chr5:41462200-41475000	Weak transcription	Left Ventricle	heart
3	chr5:41472800-41481400	Weak transcription	Fetal Heart	heart
4	chr5:41473200-41474600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:41473800-41478400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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