Variant report

Variant	rs2446961
Chromosome Location	chr5:41471444-41471445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10063880	0.88[CEU][hapmap]
rs10075789	0.88[CEU][hapmap]
rs11951028	0.88[CEU][hapmap]
rs1379309	0.87[ASN][1000 genomes]
rs1379310	0.92[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs1457130	0.86[ASN][1000 genomes]
rs1457132	0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1565968	0.88[ASN][1000 genomes]
rs172753	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2124942	0.88[ASN][1000 genomes]
rs2124943	0.88[ASN][1000 genomes]
rs2219354	0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs2445888	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318056	0.88[CEU][hapmap]
rs318060	0.88[CEU][hapmap]
rs318069	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs318070	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs318074	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs318075	0.96[ASN][1000 genomes]
rs318076	0.95[ASN][1000 genomes]
rs318077	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs318080	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs318082	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs318083	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs318085	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs318089	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3844180	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs3863150	0.88[CEU][hapmap]
rs603855	0.89[CEU][hapmap]
rs624733	0.88[CEU][hapmap]
rs6451576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655419	0.88[CEU][hapmap]
rs661518	0.89[CEU][hapmap]
rs662066	0.88[CEU][hapmap]
rs676328	0.88[CEU][hapmap]
rs685542	0.88[CEU][hapmap]
rs688551	0.80[CEU][hapmap]
rs7714031	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs7724484	0.86[ASN][1000 genomes]
rs9292809	0.89[CEU][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41452800-41494000	Weak transcription	Ovary	ovary
2	chr5:41462200-41475000	Weak transcription	Left Ventricle	heart
3	chr5:41470600-41473800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:41471400-41472800	Enhancers	Fetal Heart	heart

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