Variant report

Variant	rs318080
Chromosome Location	chr5:41457347-41457348
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11951028	0.80[AFR][1000 genomes]
rs13155221	0.86[CHB][hapmap]
rs1379309	0.95[ASN][1000 genomes]
rs1379310	1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[ASN][1000 genomes]
rs1457130	0.93[ASN][1000 genomes]
rs1457132	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1565968	0.92[ASN][1000 genomes]
rs172753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2124942	0.92[ASN][1000 genomes]
rs2124943	0.92[ASN][1000 genomes]
rs2219354	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2445888	0.92[ASN][1000 genomes]
rs2446961	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs318069	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs318070	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs318074	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs318075	0.92[ASN][1000 genomes]
rs318076	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs318077	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs318082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318085	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318089	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3844180	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs6451576	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7724484	0.94[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41452800-41457600	Weak transcription	Fetal Intestine Large	intestine
2	chr5:41452800-41494000	Weak transcription	Ovary	ovary
3	chr5:41453800-41457600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:41455200-41461800	Weak transcription	Left Ventricle	heart
5	chr5:41456200-41466600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:41457200-41457600	Enhancers	Fetal Heart	heart

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