Variant report

Variant	rs13155221
Chromosome Location	chr5:41473954-41473955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1379309	0.81[ASN][1000 genomes]
rs1379310	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1457132	0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs1565968	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs172753	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2124942	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2124943	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs318039	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs318069	0.86[CHB][hapmap]
rs318070	0.82[JPT][hapmap]
rs318074	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs318077	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs318080	0.86[CHB][hapmap]
rs318082	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs3844180	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7724484	0.80[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41452800-41494000	Weak transcription	Ovary	ovary
2	chr5:41462200-41475000	Weak transcription	Left Ventricle	heart
3	chr5:41472800-41481400	Weak transcription	Fetal Heart	heart
4	chr5:41473200-41474600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:41473800-41478400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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