Variant report

Variant	rs3844180
Chromosome Location	chr5:41466064-41466065
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13155221	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1379309	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1379310	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1457130	0.97[ASN][1000 genomes]
rs1457132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1565968	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs172753	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2124942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2124943	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2445888	0.86[ASN][1000 genomes]
rs2446961	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs318039	1.00[CEU][hapmap]
rs318069	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs318070	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs318074	1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[ASN][1000 genomes]
rs318075	0.86[ASN][1000 genomes]
rs318076	0.91[ASN][1000 genomes]
rs318077	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs318080	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs318082	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[ASN][1000 genomes]
rs318083	0.94[ASN][1000 genomes]
rs318085	0.94[ASN][1000 genomes]
rs318089	0.92[ASN][1000 genomes]
rs6451576	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs7724484	0.98[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41452800-41494000	Weak transcription	Ovary	ovary
2	chr5:41456200-41466600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:41462200-41475000	Weak transcription	Left Ventricle	heart
4	chr5:41465600-41466200	Enhancers	Fetal Heart	heart
5	chr5:41465800-41466200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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