Variant report

Variant	rs318074
Chromosome Location	chr5:41448187-41448188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41443079..41445099-chr5:41446531..41448774,3	MCF-7	breast:
2	chr5:41435341..41438603-chr5:41445627..41449009,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10063880	0.83[ASW][hapmap];0.81[LWK][hapmap];0.90[MKK][hapmap]
rs10075789	0.82[MKK][hapmap]
rs11951028	0.83[ASW][hapmap];0.82[LWK][hapmap];0.85[MKK][hapmap]
rs13155221	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs1379309	0.93[ASN][1000 genomes]
rs1379310	1.00[CHB][hapmap];0.90[CHD][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs1457130	0.95[ASN][1000 genomes]
rs1457132	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1565968	0.90[ASN][1000 genomes]
rs172753	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2124942	0.90[ASN][1000 genomes]
rs2124943	0.90[ASN][1000 genomes]
rs2219354	0.92[CEU][hapmap]
rs2445888	0.90[ASN][1000 genomes]
rs2446961	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs318069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs318070	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs318075	0.94[ASN][1000 genomes]
rs318076	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs318077	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs318080	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs318082	0.91[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.96[MKK][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs318083	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs318085	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs318089	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3844180	1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[ASN][1000 genomes]
rs3863150	0.83[MKK][hapmap]
rs6451576	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[ASN][1000 genomes]
rs662066	0.83[MKK][hapmap]
rs7724484	0.94[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs318074	HEATR7B2	cis	parietal	SCAN
rs318074	LIFR	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41436200-41451800	Weak transcription	Ovary	ovary
2	chr5:41443600-41456200	Enhancers	Fetal Heart	heart
3	chr5:41445800-41450800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:41446400-41448200	Enhancers	Fetal Intestine Small	intestine
5	chr5:41446400-41448600	Enhancers	Left Ventricle	heart
6	chr5:41446800-41448400	Enhancers	Brain Germinal Matrix	brain
7	chr5:41447200-41448400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:41447200-41448400	Enhancers	Fetal Intestine Large	intestine
9	chr5:41448000-41450200	Weak transcription	Right Ventricle	heart
10	chr5:41448000-41450800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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