Variant report

Variant	rs2219354
Chromosome Location	chr5:41475056-41475057
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10057833	0.86[ASN][1000 genomes]
rs10060029	0.86[ASN][1000 genomes]
rs10063143	0.86[ASN][1000 genomes]
rs10063880	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10075789	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10941543	0.84[ASN][1000 genomes]
rs11951028	1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1598738	0.86[ASN][1000 genomes]
rs172753	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1827692	0.86[ASN][1000 genomes]
rs2446961	0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs2644046	0.86[ASN][1000 genomes]
rs2876922	0.86[ASN][1000 genomes]
rs318018	0.86[ASN][1000 genomes]
rs318039	1.00[CHB][hapmap]
rs318069	0.93[CEU][hapmap]
rs318074	0.92[CEU][hapmap]
rs318076	0.86[EUR][1000 genomes]
rs318080	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs318082	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs318083	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs318085	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs318089	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3863150	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs566188	0.86[ASN][1000 genomes]
rs602985	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs603855	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs624733	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs628092	0.86[ASN][1000 genomes]
rs655419	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs661518	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs662066	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs664232	0.86[ASN][1000 genomes]
rs675451	0.86[ASN][1000 genomes]
rs676328	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs685542	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6871147	0.82[ASN][1000 genomes]
rs6877159	0.86[ASN][1000 genomes]
rs688551	0.86[ASN][1000 genomes]
rs6895255	0.86[ASN][1000 genomes]
rs7700933	0.86[ASN][1000 genomes]
rs7714031	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs822138	0.86[ASN][1000 genomes]
rs822139	0.86[ASN][1000 genomes]
rs822141	0.86[ASN][1000 genomes]
rs822146	0.86[ASN][1000 genomes]
rs861980	0.86[ASN][1000 genomes]
rs9292809	1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41452800-41494000	Weak transcription	Ovary	ovary
2	chr5:41472800-41481400	Weak transcription	Fetal Heart	heart
3	chr5:41473800-41478400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:41474600-41477600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr5:41475000-41475600	ZNF genes & repeats	Left Ventricle	heart

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