Variant report

Variant	rs902247
Chromosome Location	chr3:68836710-68836711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10049352	0.86[EUR][1000 genomes]
rs11128090	0.86[ASN][1000 genomes]
rs11920714	0.87[EUR][1000 genomes]
rs11920741	0.87[EUR][1000 genomes]
rs12054044	0.87[ASN][1000 genomes]
rs12629295	0.88[ASN][1000 genomes]
rs12632377	0.84[ASN][1000 genomes]
rs12633144	0.86[ASN][1000 genomes]
rs12635072	0.88[ASN][1000 genomes]
rs12638859	0.81[ASN][1000 genomes]
rs13062535	0.88[ASN][1000 genomes]
rs13066315	0.88[ASN][1000 genomes]
rs13075703	0.84[EUR][1000 genomes]
rs13093729	0.88[ASN][1000 genomes]
rs13095333	0.88[ASN][1000 genomes]
rs13097433	0.88[ASN][1000 genomes]
rs1352638	0.90[EUR][1000 genomes]
rs1354439	0.83[EUR][1000 genomes]
rs1387731	0.90[EUR][1000 genomes]
rs1489992	0.86[EUR][1000 genomes]
rs1489993	0.87[EUR][1000 genomes]
rs1489995	0.85[EUR][1000 genomes]
rs1565386	0.86[EUR][1000 genomes]
rs1580569	0.87[EUR][1000 genomes]
rs1602199	0.90[EUR][1000 genomes]
rs1602200	0.87[EUR][1000 genomes]
rs17047978	0.88[ASN][1000 genomes]
rs17047979	0.88[ASN][1000 genomes]
rs17047991	0.89[ASN][1000 genomes]
rs1873263	0.86[EUR][1000 genomes]
rs1948291	0.89[ASN][1000 genomes]
rs1994592	0.89[ASN][1000 genomes]
rs1994593	0.89[ASN][1000 genomes]
rs2130436	0.90[EUR][1000 genomes]
rs2314317	0.90[EUR][1000 genomes]
rs34006637	0.89[ASN][1000 genomes]
rs34098780	0.90[ASN][1000 genomes]
rs34285930	0.90[ASN][1000 genomes]
rs34668623	0.88[ASN][1000 genomes]
rs34919495	0.85[ASN][1000 genomes]
rs35270691	0.90[ASN][1000 genomes]
rs35336306	0.87[ASN][1000 genomes]
rs35593664	0.88[ASN][1000 genomes]
rs35740552	0.85[ASN][1000 genomes]
rs35768765	0.89[ASN][1000 genomes]
rs35868242	0.88[ASN][1000 genomes]
rs35912963	0.88[ASN][1000 genomes]
rs4484195	0.89[EUR][1000 genomes]
rs4855342	0.88[ASN][1000 genomes]
rs4855345	0.82[EUR][1000 genomes]
rs4855509	0.89[ASN][1000 genomes]
rs4855510	0.89[ASN][1000 genomes]
rs4855511	0.89[ASN][1000 genomes]
rs4855521	0.87[EUR][1000 genomes]
rs56909663	0.88[ASN][1000 genomes]
rs6549146	0.87[EUR][1000 genomes]
rs6549147	0.87[EUR][1000 genomes]
rs6764924	0.87[EUR][1000 genomes]
rs6774520	0.85[ASN][1000 genomes]
rs6774607	0.86[ASN][1000 genomes]
rs6801847	0.87[ASN][1000 genomes]
rs71302144	0.87[ASN][1000 genomes]
rs71302145	0.88[ASN][1000 genomes]
rs71302146	0.88[ASN][1000 genomes]
rs71302148	0.82[ASN][1000 genomes]
rs7621668	0.87[EUR][1000 genomes]
rs7635448	0.87[EUR][1000 genomes]
rs7642323	0.89[ASN][1000 genomes]
rs876535	0.91[EUR][1000 genomes]
rs902246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812027	0.88[EUR][1000 genomes]
rs9815927	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9818648	0.90[EUR][1000 genomes]
rs9846042	0.87[EUR][1000 genomes]
rs9858963	0.86[EUR][1000 genomes]
rs991807	0.90[EUR][1000 genomes]
rs991808	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68829800-68844000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:68833400-68837000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:68836200-68837600	Enhancers	Fetal Lung	lung

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