Variant report

Variant	rs4855345
Chromosome Location	chr3:68881937-68881938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10049352	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11920714	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11920741	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13075703	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1352638	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1354439	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1387731	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1489992	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1489993	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1489995	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1565386	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1580569	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1602199	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1602200	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1826134	0.85[AMR][1000 genomes]
rs1873263	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2130436	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2314317	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4484195	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4855521	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62254116	0.85[EUR][1000 genomes]
rs6549146	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6549147	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6764924	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7621668	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7635448	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs876535	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs902246	0.82[EUR][1000 genomes]
rs902247	0.82[EUR][1000 genomes]
rs9812027	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9815927	0.82[EUR][1000 genomes]
rs9818648	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9829270	0.84[AMR][1000 genomes]
rs9846042	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9858963	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs991807	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs991808	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv876930	chr3:68844213-68961010	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv876931	chr3:68858280-68961010	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1014265	chr3:68867645-68921748	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
5	nsv876932	chr3:68868560-68961010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2762332	chr3:68881162-68890638	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68875400-68882000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:68881600-68882200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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