Variant report

Variant	rs9829270
Chromosome Location	chr3:68800168-68800169
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10049352	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920714	0.89[AMR][1000 genomes]
rs11920741	0.90[AMR][1000 genomes]
rs13075703	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1352638	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1354439	0.90[AMR][1000 genomes]
rs1387731	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1489992	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1489993	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1489995	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1565386	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1580569	0.91[AMR][1000 genomes]
rs1602199	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1602200	0.90[AMR][1000 genomes]
rs1826134	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1873263	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2130436	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2314317	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4484195	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4855345	0.84[AMR][1000 genomes]
rs4855521	0.87[AMR][1000 genomes]
rs6549146	0.89[AMR][1000 genomes]
rs6549147	0.89[AMR][1000 genomes]
rs6764924	0.87[AMR][1000 genomes]
rs7621668	0.90[AMR][1000 genomes]
rs7635448	0.90[AMR][1000 genomes]
rs876535	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9812027	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9818648	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9846042	0.89[AMR][1000 genomes]
rs9858963	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs991807	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs991808	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68789400-68801200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:68796200-68805000	Weak transcription	Aorta	Aorta
3	chr3:68799800-68808800	Weak transcription	Stomach Smooth Muscle	stomach

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