Variant report

Variant	rs904652
Chromosome Location	chr3:118352243-118352244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16828633	0.90[ASN][1000 genomes]
rs16828635	0.90[ASN][1000 genomes]
rs4131580	0.90[ASN][1000 genomes]
rs4131581	0.90[ASN][1000 genomes]
rs4383519	0.90[ASN][1000 genomes]
rs57050352	0.89[ASN][1000 genomes]
rs6769257	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72956924	0.89[ASN][1000 genomes]
rs7625296	0.90[ASN][1000 genomes]
rs7627516	0.90[ASN][1000 genomes]
rs7638026	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829690	chr3:118205361-118378010	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs904652	CSTA	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118348000-118353400	Weak transcription	Fetal Lung	lung
2	chr3:118348200-118356600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:118350000-118353200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:118351800-118353600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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