Variant report

Variant	rs906900
Chromosome Location	chr2:167533831-167533832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10930241	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1115408	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1553756	0.92[AFR][1000 genomes]
rs2390429	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4233809	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4274612	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7590350	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs962091	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs964215	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532474	chr2:166993501-167548531	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752480	chr2:167163493-167567493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv875375	chr2:167515013-167703912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167533000-167535400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:167533400-167534200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:167533400-167535600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:167533800-167534200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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