Variant report

Variant	rs907372
Chromosome Location	chr15:77844516-77844517
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77837146..77840341-chr15:77840841..77844639,4	K562	blood:
2	chr15:77842609..77845174-chr8:144895503..144897609,2	MCF-7	breast:
3	chr15:77840852..77845440-chr15:77846808..77850692,5	K562	blood:

Variant related genes	Relation type
ENSG00000180900	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11854328	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs11857860	0.86[JPT][hapmap]
rs12324627	0.80[JPT][hapmap]
rs12900004	0.90[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12901130	0.85[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12904553	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12905285	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12907746	0.85[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs12913899	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4886869	0.81[CEU][hapmap]
rs4886875	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs4886876	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4886877	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs60256831	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6495240	0.89[JPT][hapmap]
rs7162637	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs907369	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv570139	chr15:77762493-77865459	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv570140	chr15:77787469-77851535	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77827000-77845400	Weak transcription	Fetal Kidney	kidney
2	chr15:77829400-77844800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:77836200-77846600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:77838600-77849800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:77838800-77849000	Weak transcription	Gastric	stomach
6	chr15:77839800-77846400	Weak transcription	Fetal Heart	heart
7	chr15:77840600-77848600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:77840800-77845200	Enhancers	Placenta	Placenta
9	chr15:77841400-77846600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:77841600-77844600	Weak transcription	Brain Anterior Caudate	brain
11	chr15:77841600-77844800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:77841600-77845400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:77841600-77845600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:77841600-77846000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr15:77841600-77846800	Weak transcription	Spleen	Spleen
16	chr15:77841600-77847000	Weak transcription	Fetal Brain Female	brain
17	chr15:77841600-77849600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:77842200-77844600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:77842200-77844600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:77842200-77850200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr15:77842800-77850400	Enhancers	Brain Hippocampus Middle	brain
22	chr15:77843000-77845000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr15:77843400-77846400	Weak transcription	Fetal Stomach	stomach
24	chr15:77843600-77844800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:77843600-77846200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:77843800-77844800	Weak transcription	Brain Angular Gyrus	brain
27	chr15:77843800-77844800	Weak transcription	Brain Substantia Nigra	brain
28	chr15:77843800-77845800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:77843800-77846000	Bivalent Enhancer	HepG2	liver
30	chr15:77843800-77847400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:77844000-77846000	Weak transcription	Fetal Muscle Leg	muscle
32	chr15:77844000-77846600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:77844200-77844600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr15:77844400-77844600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:77844400-77844800	Enhancers	Stomach Mucosa	stomach
36	chr15:77844400-77845000	Enhancers	Duodenum Mucosa	Duodenum
37	chr15:77844400-77845000	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr15:77844400-77846600	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr15:77844400-77848400	Weak transcription	Fetal Intestine Small	intestine
40	chr15:77844400-77850200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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