Variant report

Variant	rs4886869
Chromosome Location	chr15:77799657-77799658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77797488..77799735-chr15:77817665..77820663,3	MCF-7	breast:
2	chr15:77798766..77801292-chr15:77802279..77806455,3	K562	blood:

Variant related genes	Relation type
ENSG00000259362	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1005752	0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10152181	0.88[ASN][1000 genomes]
rs1022172	0.96[ASN][1000 genomes]
rs11072653	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs11632966	0.89[ASN][1000 genomes]
rs11633054	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11636554	0.85[ASN][1000 genomes]
rs11852471	0.90[ASN][1000 genomes]
rs11854328	0.85[JPT][hapmap]
rs11857450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11857860	0.91[JPT][hapmap]
rs1191196	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12324627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12900004	0.86[JPT][hapmap]
rs12901130	1.00[JPT][hapmap]
rs12901503	0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs12904938	0.92[ASN][1000 genomes]
rs12905951	0.87[ASN][1000 genomes]
rs12906708	0.89[ASN][1000 genomes]
rs12907746	0.87[JPT][hapmap]
rs12910361	0.91[ASN][1000 genomes]
rs12910480	0.87[ASN][1000 genomes]
rs12911371	0.90[ASN][1000 genomes]
rs12912050	0.89[ASN][1000 genomes]
rs12914345	0.89[ASN][1000 genomes]
rs1389436	0.89[ASN][1000 genomes]
rs1473922	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1493700	0.89[ASN][1000 genomes]
rs1565756	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs1565757	0.89[ASN][1000 genomes]
rs1602925	0.90[ASN][1000 genomes]
rs2055901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs34591043	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs4886515	0.90[ASN][1000 genomes]
rs4886858	0.86[ASN][1000 genomes]
rs4886862	0.89[ASN][1000 genomes]
rs4886866	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4886875	0.91[JPT][hapmap]
rs4886876	0.91[JPT][hapmap]
rs4886877	0.91[JPT][hapmap]
rs59153558	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62007299	0.89[ASN][1000 genomes]
rs62009066	0.87[ASN][1000 genomes]
rs6495240	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7166927	0.90[ASN][1000 genomes]
rs7167794	0.87[ASN][1000 genomes]
rs7175674	0.90[ASN][1000 genomes]
rs7176302	0.90[ASN][1000 genomes]
rs7178572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8024485	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs8030074	0.89[ASN][1000 genomes]
rs8034133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8037561	0.90[ASN][1000 genomes]
rs907372	0.81[CEU][hapmap]
rs952471	0.94[ASN][1000 genomes]
rs952472	0.94[ASN][1000 genomes]
rs965480	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv570139	chr15:77762493-77865459	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv570140	chr15:77787469-77851535	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77786200-77800000	Weak transcription	Thymus	Thymus
2	chr15:77786400-77803800	Weak transcription	Primary T cells from cord blood	blood
3	chr15:77789800-77801000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:77794200-77800000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:77794800-77799800	Enhancers	HepG2	liver
6	chr15:77794800-77800600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:77795400-77803000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:77795600-77800800	Enhancers	Brain Germinal Matrix	brain
9	chr15:77795800-77800000	Enhancers	Brain Angular Gyrus	brain
10	chr15:77795800-77800000	Enhancers	Brain Substantia Nigra	brain
11	chr15:77795800-77800400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:77795800-77801400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:77795800-77801600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr15:77796000-77801800	Enhancers	Fetal Lung	lung
15	chr15:77796200-77800600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:77796400-77801000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:77796600-77803800	Enhancers	Left Ventricle	heart
18	chr15:77796600-77804200	Enhancers	Fetal Heart	heart
19	chr15:77796800-77800400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:77796800-77801600	Enhancers	Esophagus	oesophagus
21	chr15:77797000-77801400	Enhancers	Placenta	Placenta
22	chr15:77797000-77801600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:77797000-77801800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr15:77797000-77803200	Enhancers	Lung	lung
25	chr15:77797000-77803400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:77797000-77803800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr15:77797200-77800800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:77797200-77801600	Enhancers	HMEC	breast
29	chr15:77797200-77802400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr15:77797200-77803200	Enhancers	Right Atrium	heart
31	chr15:77797400-77799800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr15:77797400-77801200	Enhancers	NHEK	skin
33	chr15:77797400-77801400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:77797400-77801600	Enhancers	Pancreas	Pancrea
35	chr15:77797800-77800000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:77797800-77801800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:77798000-77799800	Enhancers	HUVEC	blood vessel
38	chr15:77798000-77801400	Enhancers	Fetal Stomach	stomach
39	chr15:77798000-77801600	Enhancers	NH-A	brain
40	chr15:77798000-77803200	Enhancers	Spleen	Spleen
41	chr15:77798200-77800000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:77798200-77801600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:77798200-77801800	Enhancers	Fetal Thymus	thymus
44	chr15:77798200-77802600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr15:77798400-77803400	Enhancers	Fetal Muscle Trunk	muscle
46	chr15:77798400-77803800	Enhancers	Fetal Muscle Leg	muscle
47	chr15:77798600-77799800	Enhancers	Brain Anterior Caudate	brain
48	chr15:77798600-77800200	Enhancers	Fetal Brain Male	brain
49	chr15:77798600-77800800	Enhancers	Small Intestine	intestine
50	chr15:77798600-77801000	Enhancers	Gastric	stomach

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