Variant report

Variant	rs12906708
Chromosome Location	chr15:77681444-77681445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77676422..77679960-chr15:77680439..77684994,6	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10152181	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1022172	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11072653	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11632966	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11633054	0.95[ASN][1000 genomes]
rs11636554	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11852471	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11857294	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11857450	0.87[ASN][1000 genomes]
rs11858641	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1191196	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12324627	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12904938	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12905951	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12910361	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12910480	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12911371	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12912050	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12914345	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1389436	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1473922	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1493700	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1565756	0.94[ASN][1000 genomes]
rs1565757	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1602925	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2055901	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2175941	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28584877	0.80[ASN][1000 genomes]
rs34591043	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4886515	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4886858	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886862	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4886866	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4886869	0.89[ASN][1000 genomes]
rs59153558	0.84[ASN][1000 genomes]
rs62007299	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62008452	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495240	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7166927	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7167794	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7175674	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7176302	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7178572	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs8024485	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8030074	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8034133	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8037561	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs952471	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs952472	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs965480	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1830237	chr15:77535785-77694607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1836778	chr15:77608747-77694607	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv1795063	chr15:77628696-77697976	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv1800929	chr15:77664889-77697976	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1792043	chr15:77664901-77708316	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77639800-77687000	Weak transcription	Primary B cells from cord blood	blood
2	chr15:77647000-77687200	Weak transcription	A549	lung
3	chr15:77648600-77685800	Weak transcription	Gastric	stomach
4	chr15:77656400-77683200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:77669400-77683400	Weak transcription	Fetal Stomach	stomach
6	chr15:77673200-77683400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:77674200-77681800	Weak transcription	Aorta	Aorta
8	chr15:77674200-77686600	Weak transcription	Ovary	ovary
9	chr15:77674800-77684000	Weak transcription	Stomach Mucosa	stomach
10	chr15:77675000-77684400	Weak transcription	Spleen	Spleen
11	chr15:77675000-77709400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:77675600-77685200	Weak transcription	Lung	lung
13	chr15:77676800-77681600	Enhancers	Fetal Heart	heart
14	chr15:77677200-77685800	Weak transcription	NHLF	lung
15	chr15:77678000-77685600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:77678200-77686200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:77678200-77695200	Weak transcription	HUVEC	blood vessel
18	chr15:77679000-77682200	Weak transcription	Colon Smooth Muscle	Colon
19	chr15:77679200-77683000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:77679800-77685400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:77680000-77682000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:77680000-77683000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:77680200-77681600	Enhancers	Right Atrium	heart
24	chr15:77680400-77682000	Weak transcription	Adipose Nuclei	Adipose
25	chr15:77680400-77682800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:77680400-77683200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:77680400-77683200	Weak transcription	Brain Hippocampus Middle	brain
28	chr15:77680400-77683200	Weak transcription	Right Ventricle	heart
29	chr15:77680400-77683800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:77680400-77685200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:77680400-77686600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr15:77680600-77682000	Weak transcription	Brain Substantia Nigra	brain
33	chr15:77680600-77682000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr15:77680600-77682200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:77680600-77682200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:77680600-77682600	Weak transcription	Brain Anterior Caudate	brain
37	chr15:77680600-77682800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr15:77680600-77682800	Weak transcription	Left Ventricle	heart
39	chr15:77680600-77682800	Weak transcription	Psoas Muscle	Psoas
40	chr15:77680600-77683200	Weak transcription	Fetal Muscle Leg	muscle
41	chr15:77680600-77685200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:77680600-77685800	Weak transcription	Osteobl	bone
43	chr15:77680600-77687400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:77680600-77687600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:77680800-77682400	Weak transcription	NHDF-Ad	bronchial
46	chr15:77680800-77683200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:77681000-77682400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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