Variant report

Variant	rs11633054
Chromosome Location	chr15:77747276-77747277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77745907..77748429-chr15:77784323..77786088,2	K562	blood:
2	chr15:77745907..77748744-chr15:77783742..77785823,2	K562	blood:
3	chr15:77741931..77744582-chr15:77746845..77748481,2	K562	blood:
4	chr15:77745716..77748701-chr15:77749105..77750869,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140382	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1005752	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10152181	0.94[ASN][1000 genomes]
rs1022172	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11072653	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs11632966	0.95[ASN][1000 genomes]
rs11636554	0.91[ASN][1000 genomes]
rs11852471	0.96[ASN][1000 genomes]
rs11854328	0.85[JPT][hapmap]
rs11857294	0.81[ASN][1000 genomes]
rs11857450	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11857860	0.91[JPT][hapmap]
rs11858641	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1191196	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.95[ASN][1000 genomes]
rs12324627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12900004	0.86[JPT][hapmap]
rs12901130	1.00[JPT][hapmap]
rs12901503	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12904938	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12905951	0.94[ASN][1000 genomes]
rs12906708	0.95[ASN][1000 genomes]
rs12907746	0.87[JPT][hapmap]
rs12910361	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12910480	0.94[ASN][1000 genomes]
rs12911371	0.96[ASN][1000 genomes]
rs12912050	0.95[ASN][1000 genomes]
rs12914345	0.95[ASN][1000 genomes]
rs1389436	0.95[ASN][1000 genomes]
rs1473922	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs1493700	0.95[ASN][1000 genomes]
rs1565756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1565757	0.95[ASN][1000 genomes]
rs1602925	0.96[ASN][1000 genomes]
rs2055901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34591043	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886515	0.96[ASN][1000 genomes]
rs4886858	0.92[ASN][1000 genomes]
rs4886862	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4886866	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs4886869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4886875	0.91[JPT][hapmap]
rs4886876	0.91[JPT][hapmap]
rs4886877	0.91[JPT][hapmap]
rs59153558	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62007299	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62009066	0.81[ASN][1000 genomes]
rs6495240	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166927	0.96[ASN][1000 genomes]
rs7167794	0.94[ASN][1000 genomes]
rs7170877	0.85[EUR][1000 genomes]
rs7171448	0.85[EUR][1000 genomes]
rs7172144	0.83[EUR][1000 genomes]
rs7175674	0.96[ASN][1000 genomes]
rs7176302	0.96[ASN][1000 genomes]
rs7177055	0.84[EUR][1000 genomes]
rs7178572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024485	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8030074	0.95[ASN][1000 genomes]
rs8034133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037561	0.96[ASN][1000 genomes]
rs869301	0.83[EUR][1000 genomes]
rs907388	0.85[EUR][1000 genomes]
rs952471	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs952472	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs965480	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77714000-77748600	Weak transcription	Placenta	Placenta
2	chr15:77717000-77754400	Weak transcription	K562	blood
3	chr15:77727400-77747800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr15:77729600-77748000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:77729600-77749200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr15:77730400-77748600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr15:77730600-77758800	Weak transcription	Lung	lung
8	chr15:77733200-77748000	Weak transcription	HMEC	breast
9	chr15:77733200-77749200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:77733200-77750200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:77736400-77748800	Weak transcription	Pancreas	Pancrea
12	chr15:77736800-77749400	Weak transcription	Gastric	stomach
13	chr15:77736800-77750800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr15:77737000-77747800	Weak transcription	Fetal Kidney	kidney
15	chr15:77737200-77749400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:77737800-77748000	Weak transcription	Left Ventricle	heart
17	chr15:77737800-77749200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:77738200-77749400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:77738400-77748000	Weak transcription	Psoas Muscle	Psoas
20	chr15:77738400-77749200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:77738400-77749400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:77738600-77747800	Weak transcription	Fetal Heart	heart
23	chr15:77738600-77750600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr15:77739000-77750800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr15:77739600-77748000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:77739600-77748000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr15:77739800-77749600	Weak transcription	Brain Anterior Caudate	brain
28	chr15:77739800-77749800	Weak transcription	HepG2	liver
29	chr15:77739800-77750800	Weak transcription	Liver	Liver
30	chr15:77739800-77751800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:77739800-77755600	Weak transcription	A549	lung
32	chr15:77740000-77748000	Weak transcription	Brain Substantia Nigra	brain
33	chr15:77740000-77750600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr15:77740200-77751800	Weak transcription	Brain Angular Gyrus	brain
35	chr15:77740800-77747400	Weak transcription	Ovary	ovary
36	chr15:77740800-77748000	Weak transcription	Right Atrium	heart
37	chr15:77740800-77748000	Weak transcription	Dnd41	blood
38	chr15:77741000-77756000	Weak transcription	Colonic Mucosa	Colon
39	chr15:77741200-77748000	Weak transcription	Colon Smooth Muscle	Colon
40	chr15:77741400-77748000	Weak transcription	Small Intestine	intestine
41	chr15:77741400-77748600	Weak transcription	Fetal Intestine Small	intestine
42	chr15:77741600-77748000	Weak transcription	Fetal Stomach	stomach
43	chr15:77741600-77749200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr15:77741800-77748000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr15:77741800-77749600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr15:77742400-77749400	Weak transcription	Fetal Thymus	thymus
47	chr15:77742400-77750800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr15:77742600-77749200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:77743200-77747400	Weak transcription	HSMM	muscle
50	chr15:77743200-77747800	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links