Variant report

Variant	rs28584877
Chromosome Location	chr15:77599003-77599004
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77597221..77600603-chr15:77601241..77604606,4	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10152181	0.80[EUR][1000 genomes]
rs11072643	0.81[EUR][1000 genomes]
rs11072653	0.81[ASN][1000 genomes]
rs1125617	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11630689	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11632941	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11632966	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11636554	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11639314	0.82[ASN][1000 genomes]
rs11852471	0.81[ASN][1000 genomes]
rs11853460	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11857294	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11858641	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1191196	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12443386	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12904938	0.80[ASN][1000 genomes]
rs12905951	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12906708	0.80[ASN][1000 genomes]
rs12907847	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12908262	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12909924	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12910480	0.81[ASN][1000 genomes]
rs12911371	0.81[ASN][1000 genomes]
rs12912050	0.80[ASN][1000 genomes]
rs12913233	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12914128	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12914345	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12916731	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1389436	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1446312	0.81[EUR][1000 genomes]
rs1473922	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1493700	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1565757	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1602925	0.81[ASN][1000 genomes]
rs1823100	0.80[EUR][1000 genomes]
rs1867779	0.81[EUR][1000 genomes]
rs2175941	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34591043	0.80[ASN][1000 genomes]
rs3743478	0.80[EUR][1000 genomes]
rs3743479	0.80[EUR][1000 genomes]
rs4414462	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4886515	0.81[ASN][1000 genomes]
rs4886850	0.80[EUR][1000 genomes]
rs4886856	0.82[ASN][1000 genomes]
rs4886858	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4886862	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4886866	0.81[ASN][1000 genomes]
rs62008452	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495237	0.90[ASN][1000 genomes]
rs7163503	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7166927	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7167794	0.81[ASN][1000 genomes]
rs7175674	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7176302	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8024485	0.80[ASN][1000 genomes]
rs8030074	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8037426	0.90[ASN][1000 genomes]
rs8037561	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1041064	chr15:77497903-77631698	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1051744	chr15:77511489-77679160	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1044270	chr15:77534919-77611256	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv542445	chr15:77534919-77611256	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv1830237	chr15:77535785-77694607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1040430	chr15:77584375-77676957	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77577200-77619400	Weak transcription	HSMM	muscle
2	chr15:77583000-77603600	Weak transcription	Left Ventricle	heart
3	chr15:77586800-77601800	Weak transcription	Stomach Mucosa	stomach
4	chr15:77588600-77603400	Weak transcription	Osteobl	bone
5	chr15:77592800-77604000	Weak transcription	NHDF-Ad	bronchial
6	chr15:77596000-77599600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:77596800-77601000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:77597400-77604800	Weak transcription	Psoas Muscle	Psoas
9	chr15:77597800-77600400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr15:77597800-77600600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr15:77598200-77599200	Flanking Active TSS	K562	blood
12	chr15:77598600-77600200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr15:77598600-77600400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr15:77598600-77600400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr15:77598800-77599200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:77598800-77599600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:77598800-77600200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr15:77598800-77600200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr15:77598800-77609800	Weak transcription	Brain Angular Gyrus	brain
20	chr15:77599000-77599800	Enhancers	Brain Anterior Caudate	brain
21	chr15:77599000-77599800	Enhancers	Brain Substantia Nigra	brain
22	chr15:77599000-77603000	Weak transcription	Adipose Nuclei	Adipose
23	chr15:77599000-77603000	Weak transcription	A549	lung

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