Variant report
Variant | rs6495237 |
---|---|
Chromosome Location | chr15:77591535-77591536 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:77585431..77587225-chr15:77589534..77592219,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11072643 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs11072653 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs1125617 | 0.85[ASN][1000 genomes] |
rs11630689 | 0.82[ASN][1000 genomes] |
rs11632941 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.86[ASN][1000 genomes] |
rs11632966 | 0.80[ASN][1000 genomes] |
rs11633054 | 0.95[CHB][hapmap];0.91[JPT][hapmap] |
rs11636554 | 0.83[ASN][1000 genomes] |
rs11639314 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11853287 | 0.80[CHB][hapmap];0.95[JPT][hapmap] |
rs11853460 | 0.81[ASN][1000 genomes] |
rs11857294 | 0.93[ASN][1000 genomes] |
rs11858641 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs1191196 | 0.95[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap];0.80[ASN][1000 genomes] |
rs12324627 | 0.94[CHB][hapmap];0.90[JPT][hapmap] |
rs12904088 | 0.81[CHB][hapmap];0.95[JPT][hapmap] |
rs12907847 | 0.80[ASN][1000 genomes] |
rs12908262 | 0.80[ASN][1000 genomes] |
rs12909924 | 0.88[ASN][1000 genomes] |
rs12913233 | 0.87[ASN][1000 genomes] |
rs12914128 | 0.80[ASN][1000 genomes] |
rs12914345 | 0.80[ASN][1000 genomes] |
rs12916731 | 0.81[ASN][1000 genomes] |
rs1389436 | 0.80[ASN][1000 genomes] |
rs1446312 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
rs1473922 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs1493700 | 0.80[ASN][1000 genomes] |
rs1565756 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs1565757 | 0.80[ASN][1000 genomes] |
rs1823100 | 0.85[CHB][hapmap];0.95[JPT][hapmap] |
rs2055901 | 0.95[CHB][hapmap];0.91[JPT][hapmap] |
rs2175941 | 0.94[ASN][1000 genomes] |
rs28584877 | 0.90[ASN][1000 genomes] |
rs34591043 | 0.95[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap] |
rs3743478 | 0.85[CHB][hapmap];0.95[JPT][hapmap] |
rs3743479 | 0.85[CHB][hapmap];0.95[JPT][hapmap] |
rs4243045 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap] |
rs4414462 | 0.83[ASN][1000 genomes] |
rs4886850 | 0.85[CHB][hapmap];0.95[JPT][hapmap] |
rs4886856 | 0.81[ASN][1000 genomes] |
rs4886858 | 0.81[ASN][1000 genomes] |
rs4886862 | 0.80[ASN][1000 genomes] |
rs4886866 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs62008452 | 0.94[ASN][1000 genomes] |
rs6495240 | 0.94[CHB][hapmap];0.89[JPT][hapmap] |
rs7163503 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs7178572 | 0.95[CHB][hapmap];0.91[JPT][hapmap] |
rs8024485 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs8030074 | 0.80[ASN][1000 genomes] |
rs8034133 | 0.95[CHB][hapmap];0.91[JPT][hapmap] |
rs8037426 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1040852 | chr15:77160237-78137541 | Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
2 | nsv1045376 | chr15:77354671-77801487 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
3 | nsv542443 | chr15:77354671-77801487 | Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
4 | esv1832234 | chr15:77451350-77694607 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
5 | nsv916323 | chr15:77485765-78121259 | Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
6 | nsv1041064 | chr15:77497903-77631698 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
7 | nsv1051744 | chr15:77511489-77679160 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
8 | nsv1044270 | chr15:77534919-77611256 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
9 | nsv542445 | chr15:77534919-77611256 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
10 | esv1830237 | chr15:77535785-77694607 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
11 | nsv482689 | chr15:77576396-77731559 | Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
12 | nsv1040430 | chr15:77584375-77676957 | Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:77577200-77619400 | Weak transcription | HSMM | muscle |
2 | chr15:77580800-77592400 | Weak transcription | NHDF-Ad | bronchial |
3 | chr15:77583000-77603600 | Weak transcription | Left Ventricle | heart |
4 | chr15:77586800-77601800 | Weak transcription | Stomach Mucosa | stomach |
5 | chr15:77588600-77603400 | Weak transcription | Osteobl | bone |