Variant report

Variant	rs11853287
Chromosome Location	chr15:77399371-77399372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77397830..77402873-chr15:77403837..77409871,6	K562	blood:
2	chr15:77396281..77398389-chr15:77398942..77400984,2	K562	blood:
3	chr15:77387810..77390189-chr15:77398200..77400014,2	MCF-7	breast:
4	chr15:77361896..77364276-chr15:77398497..77401504,3	MCF-7	breast:
5	chr15:77363355..77365975-chr15:77397364..77401294,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140391	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11072643	1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1125617	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11630689	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11632941	0.83[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11636648	0.81[JPT][hapmap]
rs11853460	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11854193	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11858641	0.83[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs12443386	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12900433	0.85[ASN][1000 genomes]
rs12901297	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12904088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12907847	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12908262	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12909924	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12913233	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12914128	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12916731	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1446312	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1823100	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1867779	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3743478	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3743479	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4243045	0.83[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4414462	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4886511	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4886849	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4886850	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886856	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7163503	0.84[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7169831	0.81[JPT][hapmap]
rs7177533	0.84[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8026500	0.91[AMR][1000 genomes]
rs8028571	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77387000-77404200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:77390200-77404200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:77390400-77406400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:77393600-77399600	Weak transcription	Brain Anterior Caudate	brain
5	chr15:77393800-77403400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:77394000-77399800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:77394400-77399400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:77394600-77404200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:77394600-77413400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:77395200-77404800	Weak transcription	HepG2	liver
11	chr15:77395800-77400000	Weak transcription	Fetal Intestine Large	intestine
12	chr15:77396000-77399800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr15:77396200-77401000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:77396200-77404200	Weak transcription	Fetal Lung	lung
15	chr15:77396400-77401200	Enhancers	Fetal Muscle Leg	muscle
16	chr15:77396600-77399400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:77396600-77399400	Weak transcription	Fetal Intestine Small	intestine
18	chr15:77396600-77404800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:77396800-77399400	Weak transcription	Ovary	ovary
20	chr15:77396800-77399400	Weak transcription	Right Ventricle	heart
21	chr15:77397000-77399400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:77397000-77399400	Weak transcription	Right Atrium	heart
23	chr15:77397000-77399600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:77397000-77404200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:77397200-77399400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:77397400-77399400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:77397400-77399400	Weak transcription	NHLF	lung
28	chr15:77397400-77399800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:77397600-77399600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:77397600-77399800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr15:77397600-77404200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:77397600-77405600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:77397600-77406200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:77397600-77411200	Weak transcription	HUVEC	blood vessel
35	chr15:77397800-77411400	Weak transcription	Fetal Thymus	thymus
36	chr15:77398000-77399800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:77398000-77411600	Weak transcription	Fetal Brain Female	brain
38	chr15:77398200-77399400	Weak transcription	Left Ventricle	heart
39	chr15:77398200-77403000	Weak transcription	Spleen	Spleen
40	chr15:77398200-77405400	Weak transcription	Aorta	Aorta
41	chr15:77398400-77399600	Weak transcription	Lung	lung
42	chr15:77398400-77405600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:77399000-77400000	Enhancers	Psoas Muscle	Psoas
44	chr15:77399000-77400600	Enhancers	Adipose Nuclei	Adipose
45	chr15:77399000-77400800	Enhancers	Fetal Stomach	stomach
46	chr15:77399000-77400800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr15:77399000-77401200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:77399200-77400400	Enhancers	Colon Smooth Muscle	Colon
49	chr15:77399200-77400400	Enhancers	Stomach Smooth Muscle	stomach
50	chr15:77399200-77400600	Enhancers	Primary B cells from peripheral blood	blood

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