Variant report

Variant	rs12901297
Chromosome Location	chr15:77386675-77386676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77376152..77379118-chr15:77385975..77387775,2	MCF-7	breast:
2	chr15:77376000..77380295-chr15:77383210..77388608,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140391	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11072643	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1125617	0.80[AMR][1000 genomes]
rs11630689	0.83[AMR][1000 genomes]
rs11632941	0.80[AMR][1000 genomes]
rs11853287	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11853460	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11854193	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12443386	0.81[EUR][1000 genomes]
rs12904088	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12907847	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12908262	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12914128	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12916731	0.81[EUR][1000 genomes]
rs1446312	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1823100	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1867779	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3743478	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3743479	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4243045	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4414462	0.83[AMR][1000 genomes]
rs4886849	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4886850	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7163503	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7177533	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8026500	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8028571	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77376800-77395600	Weak transcription	Fetal Intestine Small	intestine
2	chr15:77378600-77392000	Weak transcription	Primary B cells from cord blood	blood
3	chr15:77380000-77389200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:77386000-77390200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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