Variant report

Variant	rs8028571
Chromosome Location	chr15:77444457-77444458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11072643	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1125617	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11630689	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11632941	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11639314	0.83[ASN][1000 genomes]
rs11853287	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11853460	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11854193	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857294	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11858641	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12443386	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12900433	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12901297	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12904088	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12907847	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12908262	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12909924	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12913233	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12914128	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12916731	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1446312	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1823100	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1867779	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175941	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3743478	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3743479	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4243045	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4414462	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4886511	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886849	0.83[EUR][1000 genomes]
rs4886850	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886856	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62008452	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7163503	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7177533	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77401600-77449600	Weak transcription	Colonic Mucosa	Colon
2	chr15:77411800-77449400	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:77419600-77449400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:77420400-77449800	Weak transcription	Psoas Muscle	Psoas
5	chr15:77426000-77449600	Weak transcription	Brain Angular Gyrus	brain
6	chr15:77426000-77452400	Weak transcription	Pancreas	Pancrea
7	chr15:77426200-77453200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:77427600-77460600	Weak transcription	Right Ventricle	heart
9	chr15:77428000-77449600	Weak transcription	Primary T cells from cord blood	blood
10	chr15:77432800-77448400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr15:77433200-77449200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:77433400-77449400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:77433400-77449400	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:77433400-77449600	Weak transcription	Left Ventricle	heart
15	chr15:77433600-77448400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:77434200-77460400	Weak transcription	Fetal Brain Male	brain
17	chr15:77434800-77449200	Weak transcription	Brain Anterior Caudate	brain
18	chr15:77434800-77449200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:77434800-77449400	Weak transcription	Liver	Liver
20	chr15:77435000-77448400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:77435000-77448600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:77435000-77449200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:77436000-77457800	Weak transcription	Spleen	Spleen
24	chr15:77436200-77449000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:77436200-77449400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:77436800-77449400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:77437000-77448800	Weak transcription	Fetal Lung	lung
28	chr15:77437000-77449600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr15:77437000-77451600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:77437000-77451800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:77437000-77471200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr15:77437200-77448400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:77437400-77448400	Weak transcription	Fetal Stomach	stomach
34	chr15:77437400-77448600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr15:77437400-77449400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr15:77437600-77449200	Weak transcription	HUVEC	blood vessel
37	chr15:77437600-77449600	Weak transcription	Fetal Muscle Leg	muscle
38	chr15:77437600-77453400	Weak transcription	HMEC	breast
39	chr15:77437800-77448600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:77437800-77449400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr15:77438000-77448600	Weak transcription	Adipose Nuclei	Adipose
42	chr15:77438000-77449200	Weak transcription	Primary B cells from cord blood	blood
43	chr15:77438000-77453200	Weak transcription	Fetal Heart	heart
44	chr15:77438000-77453400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:77438200-77448400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr15:77438200-77449000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:77438200-77449600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr15:77438400-77461000	Weak transcription	NH-A	brain
49	chr15:77438600-77448000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:77438600-77448000	Weak transcription	Fetal Intestine Large	intestine

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