Variant report

Variant	rs4886856
Chromosome Location	chr15:77510585-77510586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11072643	0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11072653	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1125617	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11630689	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11632941	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11639314	0.89[ASN][1000 genomes]
rs11853287	0.84[CEU][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11853460	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854193	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11857294	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11858641	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1191196	1.00[CEU][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs12443386	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12900433	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12904088	0.85[CEU][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12907847	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12908262	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12909924	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12913233	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12914128	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12916731	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446312	1.00[CEU][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1473922	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1823100	0.93[ASW][hapmap];1.00[CEU][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1867779	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175941	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28584877	0.82[ASN][1000 genomes]
rs3743478	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3743479	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4243045	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4414462	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4886511	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4886850	1.00[CEU][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4886866	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs62008452	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6495237	0.81[ASN][1000 genomes]
rs7163503	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7177533	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8028571	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8037426	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv1041064	chr15:77497903-77631698	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77473600-77527800	Weak transcription	Placenta	Placenta
2	chr15:77480400-77528000	Weak transcription	Fetal Stomach	stomach
3	chr15:77482200-77528000	Weak transcription	Spleen	Spleen
4	chr15:77484000-77518800	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:77487400-77516800	Weak transcription	Fetal Heart	heart
6	chr15:77491800-77510600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr15:77492000-77516600	Weak transcription	NH-A	brain
8	chr15:77492000-77517000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:77492200-77515000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:77492200-77516600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr15:77492200-77516800	Weak transcription	Adipose Nuclei	Adipose
12	chr15:77492200-77516800	Weak transcription	NHLF	lung
13	chr15:77492200-77527400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:77492200-77527800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:77492200-77527800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:77492200-77528200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:77492400-77516600	Weak transcription	Fetal Intestine Small	intestine
18	chr15:77492400-77516800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr15:77492400-77516800	Weak transcription	Primary B cells from cord blood	blood
20	chr15:77492400-77544000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:77492600-77516600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr15:77492600-77516800	Weak transcription	Aorta	Aorta
23	chr15:77492800-77516400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:77494600-77516600	Weak transcription	Brain Substantia Nigra	brain
25	chr15:77494800-77514200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:77494800-77518800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:77500000-77515600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:77500200-77512400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr15:77500400-77515400	Weak transcription	Fetal Lung	lung
30	chr15:77500400-77516000	Weak transcription	Dnd41	blood
31	chr15:77500400-77516800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:77500800-77511800	Weak transcription	Fetal Muscle Leg	muscle
33	chr15:77501000-77523000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:77501000-77527400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:77501800-77515400	Weak transcription	Primary T cells from cord blood	blood
36	chr15:77501800-77516000	Weak transcription	HSMM	muscle
37	chr15:77502200-77524800	Weak transcription	Osteobl	bone
38	chr15:77502400-77515800	Weak transcription	HUVEC	blood vessel
39	chr15:77503600-77512200	Weak transcription	NHDF-Ad	bronchial
40	chr15:77505800-77559400	Weak transcription	Psoas Muscle	Psoas
41	chr15:77507400-77516400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:77507400-77516600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:77507600-77528200	Weak transcription	Left Ventricle	heart
44	chr15:77508000-77543400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:77509200-77511000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:77509800-77514000	Weak transcription	Ovary	ovary
47	chr15:77509800-77516000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:77509800-77528000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr15:77510200-77510800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:77510200-77510800	Weak transcription	HepG2	liver

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